Browsing by Subject "Elasticity"
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Item Open Access Animation of deformable models(Pergamon Press, 1994) Güdükbay, Uğur; Özgüç, B.Although kinematic modelling methods are adequate for describing the shapes of static objects, they are insufficient when it comes to producing realistic animation. Physically based modelling remedies this problem by including forces, masses, strain energies and other physical quantities. The paper describes a system for the animation of deformable models. The system uses physically based modelling methods and approaches from elasticity theory for animating the models. Two different formulations, namely the primal formulation and the hybrid formulation, are implemented so that the user can select the one most suitable for an animation depending on the rigidity of the models. Collision of the models with impenetrable obstacles and constraining of the model points to fixed positions in space are implemented for use in the animations. © 1994.Item Open Access Anisotropy sensitivity of an acoustic lens with slit aperture(IEEE, 1993) Atalar, Abdullah; Ishikawa, I.; Ogura, Y.; Tomita, K.A conventional spherical acoustic lens is modified by restricting its aperture in the form of a slit to provide directional sensitivity. The spacing between the two parallel absorbing sheets forming the slit is adjustable to obtain varying slit widths. The resulting lens can be used in conjunction with V(Z) method to obtain leaky wave velocities of the sample under investigation as a function of direction. The theoretical V(Z) analysis of the lens involves a two-dimensional integral rather than one-dimensional integral of the conventional lens. Single crystal anisotropic materials are chosen as test samples. Reflection coefficients for anisotropic single crystals of given surface cut and orientation are calculated. Numerically evaluated V(Z) curves are used to deduce the surface wave velocity of the object for the given orientation. This is compared with the surface wave velocity directly calculated from the elastic parameters of the object. Results show the compromise between signal-to-noise ratio and angular resolution as the slit width is varied. V(Z) measurement results of a slitted lens are presented to be compared with calculated curves. The new lens is used to measure the acoustic velocity on the (001) surface of GaAs along varying directions with differing slit widths.Item Open Access Atomic force microscopy for the investigation of molecular and cellular behavior(Elsevier, 2016-10) Ozkan A.D.; Topal, A. E.; Dana, A.; Güler, Mustafa O.; Tekinay, A. B.The present review details the methods used for the measurement of cells and their exudates using atomic force microscopy (AFM) and outlines the general conclusions drawn by the mechanical characterization of biological materials through this method. AFM is a material characterization technique that can be operated in liquid conditions, allowing its use for the investigation of the mechanical properties of biological materials in their native environments. AFM has been used for the mechanical investigation of proteins, nucleic acids, biofilms, secretions, membrane bilayers, tissues and bacterial or eukaryotic cells; however, comparison between studies is difficult due to variances between tip sizes and morphologies, sample fixation and immobilization strategies, conditions of measurement and the mechanical parameters used for the quantification of biomaterial response. Although standard protocols for the AFM investigation of biological materials are limited and minor differences in measurement conditions may create large discrepancies, the method is nonetheless highly effective for comparatively evaluating the mechanical integrity of biomaterials and can be used for the real-time acquisition of elasticity data following the introduction of a chemical or mechanical stimulus. While it is currently of limited diagnostic value, the technique is also useful for basic research in cancer biology and the characterization of disease progression and wound healing processes.Item Open Access Atomic force microscopy: Methods and applications(Elsevier, 2017) Baykara, Mehmet Z.; Schwarz, U. D.; Lindon, J.; Tranter, G. E.; Koppenaal, D.This chapter provides an overview of atomic force microscopy, covering the fundamental aspects of the associated instrumentation and methodology as well as representative results from the literature highlighting a variety of application areas. In particular, atomic-resolution imaging and spectroscopy capabilities are emphasized, in addition to applications in biology, nanotribology and catalysis research. Finally, an outlook on emerging aspects and future prospects of atomic force microscopy is provided.Item Open Access Chaotic behavior of gas bubble in non-Newtonian fluid: A numerical study(2013) Behnia, S.; Mobadersani F.; Yahyavi, M.; Rezavand, A.In the present paper, the nonlinear behavior of bubble growth under the excitation of an acoustic pressure pulse in non-Newtonian fluid domain has been investigated. Due to the importance of the bubble in the medical applications such as drug, protein or gene delivery, blood is assumed to be the reference fluid. Effects of viscoelasticity term, Deborah number, amplitude and frequency of the acoustic pulse are studied. We have studied the dynamic behavior of the radial response of bubble using Lyapunov exponent spectra, bifurcation diagrams, time series and phase diagram. A period-doubling bifurcation structure is predicted to occur for certain values of the effects of parameters. The results show that by increasing the elasticity of the fluid, the growth phenomenon will be unstable. On the other hand, when the frequency of the external pulse increases the bubble growth experiences more stable condition. It is shown that the results are in good agreement with the previous studies. © 2013 Springer Science+Business Media Dordrecht.Item Open Access Coherent energetic interfaces accounting for in-plane degradation(Springer Netherlands, 2016) Esmaeili, A.; Javili, A.; Steinmann, P.Interfaces can play a dominant role in the overall response of a body. The importance of interfaces is particularly appreciated at small length scales due to large area to volume ratios. From the mechanical point of view, this scale dependent characteristic can be captured by endowing a coherent interface with its own elastic resistance as proposed by the interface elasticity theory. This theory proves to be an extremely powerful tool to explain size effects and to predict the behavior of nano-materials. To date, interface elasticity theory only accounts for the elastic response of coherent interfaces and obviously lacks an explanation for inelastic interface behavior such as damage or plasticity. The objective of this contribution is to extend interface elasticity theory to account for damage of coherent interfaces. To this end, a thermodynamically consistent interface elasticity theory with damage is proposed. A local damage model for the interface is presented and is extended towards a non-local damage model. The non-linear governing equations and the weak forms thereof are derived. The numerical implementation is carried out using the finite element method and consistent tangents are listed. The computational algorithms are given in detail. Finally, a series of numerical examples is studied to provide further insight into the problem and to carefully elucidate key features of the proposed theory. © 2016, Springer Science+Business Media Dordrecht.Item Open Access Elastic scaling for data stream processing(IEEE Computer Society, 2014) Gedik, B.; Schneider S.; Hirzel M.; Wu, Kun-LungThis article addresses the profitability problem associated with auto-parallelization of general-purpose distributed data stream processing applications. Auto-parallelization involves locating regions in the application's data flow graph that can be replicated at run-time to apply data partitioning, in order to achieve scale. In order to make auto-parallelization effective in practice, the profitability question needs to be answered: How many parallel channels provide the best throughput? The answer to this question changes depending on the workload dynamics and resource availability at run-time. In this article, we propose an elastic auto-parallelization solution that can dynamically adjust the number of channels used to achieve high throughput without unnecessarily wasting resources. Most importantly, our solution can handle partitioned stateful operators via run-time state migration, which is fully transparent to the application developers. We provide an implementation and evaluation of the system on an industrial-strength data stream processing platform to validate our solution. © 1990-2012 IEEE.Item Open Access Enhancing higher harmonics of a tapping cantilever by excitation at a submultiple of its resonance frequency(American Physical Society, 2005-03) Balantekin, M.; Atalar, AbdullahIn a tapping-mode atomic force microscope, the frequency spectrum of the oscillating cantilever contains higher harmonics at integer multiples of the excitation frequency. When the cantilever oscillates at its fundamental resonance frequency w 1, the high Q-factor damps the amplitudes of the higher harmonics to negligible levels, unless the higher flexural eigenmodes are coincident with those harmonics. One can enhance the nth harmonic by the Q factor when the cantilever is excited at a submultiple of its resonance frequency (w 1/n). Hence, the magnitude of the nth harmonic can be measured easily and it can be utilized to examine the material properties. We show theoretically that the amplitude of enhanced higher harmonic increases monotonically for a range of sample stiffness, if the interaction is dominated by elastic force.Item Open Access Frequency response analysis and reconstruction weighting schemes for MR elastography(2020-09) Arıyürek, CemreMagnetic resonance elastography (MRE) non-invasively and quantitatively assesses the elasticity of the in-vivo tissue. In MRE, shear waves are induced to the tissue by an actuator, while phase-contrast images are obtained by magnetic resonance imaging (MRI). Finally, elasticity maps are generated using displacement information carried by phase-contrast images. The direction and frequency of the induced shear waves could be crucial in MRE. Here, it is demonstrated by the frequency response MRE simulations that modes of the shear waves can be observed in the brain during MR elastography with high shear wave displacement values at the mode frequencies. High shear wave displacements, 10-20 times of the applied displacement, were observed at mode frequencies in phantom MRE experiments. The second part of the thesis focuses on weighting schemes to combine multiple elasticity maps reconstructed from data collected for different excitation frequencies and motion direction. A new weighting scheme, which maximizes the signal-to-noise ratio (SNR) of the final wave speed map, has been proposed for tomoelastography and Helmholtz inversions. For both inversion techniques, considering the noise on the complex MRI signal, the SNR of the reconstructed wave speed map was formulated by an analytical approach assuming a high SNR. Thus, with the proposed SNR weighting method, while not altering the accuracy or spatial resolution of the wave speed map, the SNR of the wave speed map has been improved by 2 and 1.6 times for tomoelastography and Helmholtz inversion, respectively. The bias occurring for low SNR data cases was eliminated in tomoelastography and reduced in Helmholtz inversion with the proposed SNR-weighted reconstructions. Similarly, a strain-based weighting for MRE reconstruction has been introduced. Experimental results demonstrated that strain weights could prevent artifacts at the boundaries of encapsulated tumors or tissues with membranes; however, further examination is required. In this thesis, two independent contributions have been made to the field of magnetic resonance elastography. By showing the existence of modes of the shear waves in the body, new fronts are opened in the MRE actuation methods and safety. The improvements in the elasticity map inversions could lead to the routine use of MRE in clinical practice.Item Open Access Full electrostatic control of nanomechanical buckling(American Physical Society, 2020) Erbil, Selçuk Oğuz; Hatipoğlu, Utku; Yanık, C.; Ghavami, Mahyar; Arı, Atakan B.; Yüksel, Mert; Hanay, Mehmet SelimBuckling of mechanical structures results in bistable states with spatial separation, a feature desirable for sensing, shape configuration, and mechanical computation. Although different approaches have been developed to access buckling at microscopic scales, such as heating or prestressing beams, little attention has been paid so far to dynamically control all the parameters critical for the bifurcation—the compressive stress and the lateral force on the beam. Here, we develop an all-electrostatic architecture to control the compressive force, as well as the direction and amount of buckling, without significant heat generation on micro- or nanostructures. With this architecture, we demonstrated fundamental aspects of device function and dynamics. By applying voltages at any of the digital electronics standards, we have controlled the direction of buckling. Lateral deflections as large as 12% of the beam length were achieved. By modulating the compressive stress and lateral electrostatic force acting on the beam, we tuned the potential energy barrier between the postbifurcation stable states and characterized snap-through transitions between these states. The proposed architecture opens avenues for further studies in actuators, shape-shifting devices, thermodynamics of information, and dynamical chaos.Item Open Access Harmonic cantilevers for nanomechanical sensing of elastic properties(IEEE, 2003-06) Şahin, O.; Yaralıoğlu, G.; Grow, R.; Zappe, S. F.; Atalar, Abdullah; Quate, C.; Solgaard, O.We present a micromachined scanning probe cantilever, in which a specific higher order flexural mode is designed to be resonant at an exact integer multiple of the fundamental resonance frequency. We have demonstrated that such cantilevers enable sensing of nonlinear mechanical interactions between the atomically sharp tip at the free end of the cantilever and a surface with unknown mechanical properties in tapping-mode atomic force microscopy.Item Open Access High-resolution imaging of elastic properties using harmonic cantilevers(Elsevier, 2004) Sahin, O.; Yaralioglu, G.; Grow, R.; Zappe, S. F.; Atalar, Abdullah; Quate, C.; Solgaard, O.We present a micromachined scanning probe cantilever, in which a specific higher-order flexural mode is designed to be resonant at an exact integer multiple of the fundamental resonance frequency. We have fabricated such cantilevers by reducing the stiffness of the third order flexural mode relative to the fundamental mode, and we have demonstrated that these cantilevers enable sensing of non-linear mechanical interactions between the atomically sharp tip at the free end of the cantilever and a surface with unknown mechanical properties in tapping-mode atomic force microscopy. Images of surfaces with large topographical variations show that for such samples harmonic imaging has better resolution than standard tapping-mode imaging.Item Open Access Joker: elastic stream processing with organic adaptation(Elsevier, 2020) Kahveci, Basri; Gedik, BuğraThis paper addresses the problem of auto-parallelization of streaming applications. We propose an online parallelization optimization algorithm that adjusts the degree of pipeline and data parallelism in a joint manner. We define an operator development API and a flexible parallel execution model to form a basis for the optimization algorithm. The operator interface unifies the development of different types of operators and makes operator properties visible in order to enable safe optimizations. The parallel execution model splits a data flow graph into regions. A region contains the longest sequence of compatible operators that are amenable to data parallelism as a whole and can be further parallelized with pipeline parallelism. We also develop a stream processing run-time, named Joker, to scale the execution of streaming applications in a safe, transparent, dynamic, and automatic manner. This ability is called organic adaptation. Joker implements the runtime machinery to execute a data flow graph with any parallelization configuration and most importantly change this configuration at run-time with low cost in the presence of partitioned stateful operators, in a way that is transparent to the application developers. Joker continuously monitors the run-time performance, and runs the optimization algorithm to resolve bottlenecks and scale the application by adjusting the degree of pipeline and data parallelism. The experimental evaluation based on micro-benchmarks and real-world applications showcase that our solution accomplishes elasticity by finding an effective parallelization configuration.Item Open Access Metamaterial based telemetric strain sensing in different materials(Optical Society of American (OSA), 2010) Melik, R.; Unal, E.; Perkgoz, N.K.; Puttlitz, C.; Demir, Hilmi VolkanWe present telemetric sensing of surface strains on different industrial materials using split-ring-resonator based metamaterials. For wireless strain sensing, we utilize metamaterial array architectures for high sensitivity and low nonlinearity-errors in strain sensing. In this work, telemetric strain measurements in three test materials of cast polyamide, derlin and polyamide are performed by observing operating frequency shift under mechanical deformation and these data are compared with commercially-available wired strain gauges. We demonstrate that hard material (cast polyamide) showed low slope in frequency shift vs. applied load (corresponding to high Young's modulus), while soft material (polyamide) exhibited high slope (low Young's modulus).Item Open Access Model-free adaptive hysteresis for dynamic bandwidth reservation(IEEE, 2007-10) Akar, NailDynamic bandwidth reservation refers to the process of dynamically updating the bandwidth allocation to a connection between two network end points on the basis of actual aggregate traffic demand of the connection. We assume a scenario in which bandwidth updates for the connection should not be performed too frequently and the frequency of updates are thus limited to a so-called desired update rate. We propose an asynchronous model-free adaptive hysteresis algorithm for dynamic bandwidth reservations with such update frequency constraints. We validate the effectiveness of the proposed approach by comparing its bandwidth efficiency with that of a synchronous model-based dynamic bandwidth reservation mechanism from the existing literature.Item Open Access Nonlinear PDE control of two-link flexible arm with nonuniform cross section(IEEE, 2006-06) Dog̃an, M.; Morgül, ÖmerA two-link flexible arm with nonuniform or variable cross-section by design will be considered based on an exact PDE model with boundary conditions. In this research, the nonlinear controller is used to achieve set-point regulation of the rigid modes as well as suppression of elastic vibrations. The control laws are obtained by energy based Lyapunov approach. © 2006 IEEE.Item Open Access Phase imaging in reflection with the acoustic microscope(A I P Publishing, 1978-01) Atalar, Abdullah; Quate, C. F.; Wickramasinghe, H. K.When a polished surface of a single crystal is examined with a converging acoustic beam the reflected signal has a characteristic response that is dependent upon the elastic properties of the reflecting surface. This property can be used in the acoustic microscope to monitor the thickness of layers deposited on these surfaces and the small‐scale variations of the elastic parameters in these materials.Item Open Access Power dissipation analysis in tapping-mode atomic force microscopy(American Physical Society, 2003) Balantekin, M.; Atalar, AbdullahIn a tapping-mode atomic force microscope, a power is dissipated in the sample during the imaging process. While the vibrating tip taps on the sample surface, some part of its energy is coupled to the sample. Too much dissipated power may mean the damage of the sample or the tip. The amount of power dissipation is related to the mechanical properties of a sample such as viscosity and elasticity. In this paper, we first formulate the steady-state tip-sample interaction force by a simple analytical expression, and then we derive the expressions for average and maximum power dissipated in the sample by means of sample parameters. Furthermore, for a given sample elastic properties we can determine approximately the sample damping constant by measuring the average power dissipation. Simulation results are in close agreement with our analytical approach.Item Open Access Practical and realistic animation of cloth(IEEE, 2007-05) Bayraktar, Serkan; Güdükbay, Uğur; Özgüç, BülentIn this paper, we propose a system for the practical animation of cloth materials. A mass spring based cloth model is used. Explicit time integration methods are used to solve the equations of motion. We update the spring constants dynamically according to the net force acting on them. In this way, spring constants do not grow arbitrarily to introduce numerical instability and realistic cloth appearance without over elongation is obtained. © 2007 IEEE.Item Open Access Pricing and revenue management: the value of coordination(INFORMS Inst.for Operations Res.and the Management Sciences, 2014) Kocabiyikoǧlu, A.; Popescu, I.; Stefanescu, C.The integration of systems for pricing and revenue management must trade off potential revenue gains against significant practical and technical challenges. This dilemma motivates us to investigate the value of coordinating decisions on prices and capacity allocation in a stylized setting. We propose two pairs of sequential policies for making static decisions - on pricing and revenue management - that differ in their degree of integration (hierarchical versus coordinated) and their pricing inputs (deterministic versus stochastic). For a large class of stochastic, price-dependent demand models, we prove that these four heuristics admit tractable solutions satisfying intuitive sensitivity properties. We further evaluate numerically the performance of these policies relative to a fully coordinated model, which is generally intractable. We find it interesting that near-optimal performance is usually achieved by a simple hierarchical policy that sets prices first, based on a nonnested stochastic model, and then uses these prices to optimize nested capacity allocation. This tractable policy largely outperforms its counterpart based on a deterministic pricing model. Jointly optimizing price and allocation decisions for the high-end segment improves performance, but the largest revenue benefits stem from adjusting prices to account for demand risk.