Browsing by Subject "atomic force microscopy"
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Item Open Access Detecting secondary structure and surface orientation of helical peptide monolayers from resonant hybridization signals(Nature Publishing Group, 2013) Alici, K. B.; Gallardo I.F.Hybridization of dominant vibrational modes with meta-surface resonance allows detection of both structural changes and surface orientations of bound helical peptides. Depending on the resonance frequency of meta-molecules, a red- or blue- shift in peptide Amide-I frequency is observed. The underlying coupling mechanism is described by using a temporal coupled mode theory that is in very good agreement with the experimental results. This hybridization phenomenon constitutes the basis of many nanophotonic systems such as tunable coupled mode bio-sensors and dynamic peptide systems driven by infrared signals.Item Open Access Direct measurement of molecular stiffness and damping in confined water layers(The American Physical Society, 2004) Jeffery, S.; Hoffmann, P. M.; Pethica, J. B.; Ramanujan, C.; Özer, H. Ö.; Oral, A.We present direct and linear measurements of the normal stiffness and damping of a confined, few molecule thick water layer. The measurements were obtained by use of a small amplitude (0.36 Å), off-resonance atomic force microscopy technique. We measured stiffness and damping oscillations revealing up to seven molecular layers separated by 2.526 ± 0.482 Å. Relaxation times could also be calculated and were found to indicate a significant slow-down of the dynamics of the system as the confining separation was reduced. We found that the dynamics of the system is determined not only by the interfacial pressure, but more significantly by solvation effects which depend on the exact separation of tip and surface. The dynamic forces reflect the layering of the water molecules close to the mica surface and are enhanced when the tip-surface spacing is equivalent to an integer multiple of the size of the water molecules. We were able to model these results by starting from the simple assumption that the relaxation time depends linearly on the film stiffness.Item Open Access The formation and characterization of cyclodextrin functionalized polystyrene nanofibers produced by electrospinning(2009) Uyar, Tamer; Havelund, R.; Hacaloglu J.; Zhou X.; Besenbacher F.; Kingshott P.Polystyrene (PS) nanofibers containing the inclusion complex forming beta-cyclodextrin (β-CD) were successfully produced by electrospinning aimed at developing functional fibrous nanowebs. By optimization of the electrospinning parameters, which included varying the relative concentration of PS and β-CD in the solutions, bead-free fibers were produced. Homogeneous solutions of β-CD and PS in dimethylformamide (DMF) were used with concentrations of PS varying from 10% to 25% (w/v, with respect to DMF), and β-CD concentrations of 1% to 50% (w/w, with respect to PS). The presence of β-CD facilitated the production of bead-free PS fibers even from lower polymer concentrations as a result of the higher conductivity of the PS/CD solutions. The morphology and the production of bead-free PS/CD fibers were highly dependent on the β-CD contents. Transmission electron microscope (TEM) and atomic force microscope (AFM) images showed that incorporation of β-CD yielded PS fibers with rougher surfaces. Thermogravimetric analysis (TGA) and direct insertion probe pyrolysis mass spectroscopy (DP-MS) results confirmed the presence of β-CD in the PS fibers. X-ray diffraction (XRD) spectra of the fibers indicated that the β-CD molecules are distributed within the PS matrix without any phase separated crystalline aggregates up to 40% (w/w) β-CD loading. Furthermore, chemical analyses by Fourier transform infrared (FTIR) spectroscopy studies confirm that β-CD molecules are located within the PS fiber matrix. Finally, preliminary investigations using x-ray photoelectron spectroscopy (XPS) and time-of-flight static secondary ion mass spectrometry (ToF-static-SIMS) show the presence of the cyclodextrin molecules in the outer molecular layers of the fiber surfaces. The XPS and ToF-SIMS findings indicate that cyclodextrin functionalized PS webs would have the potential to be used as molecular filters and/or nanofilters for the purposes of filtration/purification/separation owing to surface associated β-CD molecules which have inclusion complexation capability. © 2009 IOP Publishing Ltd.Item Open Access Novel techniques in multi-frequency atomic force microscopy and spectroscopy(Bilkent University, 2009) Abak, Musa KurtuluşThe capability of measuring material properties of nanostructures simultaneously with their size and shape is very desirable for characterization of novel materials and devices at the nanoscale Here we present two novel techniques for imaging and spectroscopy of mechanical and electrical properties of surface nanostructures simultaneously with topographic imaging. First we present a scanning probe technique that can be used to measure charging of localized states on conducting or partially insulating substrates at room temperature under ambient conditions. Electrostatic interactions in the presence of a charged particle between the tip and the sample is monitored by the second order flexural mode, while the fundamental mode is used for stabilizing the tip-sample separation. Cycling the bias voltage between two limits, it is possible to observe hysteresis of the second order mode amplitude due to charging. Results are presented on silicon nitride films containing silicon nanocrystals. Second we report use of nonlinear tip-sample interactions to convert the frequency components of periodic tip-sample interaction forces to frequencies where they can be resonantly detected by resonant heterodyne mixing. One flexural mode of a cantilever is used for tapping-mode imaging and another flexural mode is used for detection of forces converted in presence of an externally injected mechanical oscillation at the difference frequency of the detecting mode and a harmonic of the tapping mode. Material contrast in attractive and repulsive regimes are demonstrated on samples with polymethyl methacrylate patterns and with deoxyribonucleic acid strands on silicon. The techniques can be implemented using standard force microscopy systemsand cantilevers, which make them potentially useful to a greater scientific community.