Browsing by Subject "Crystallography"

Now showing 1 - 8 of 8

Open Access
BilKristal 2.0: a tool for pattern information extraction from crystal structures
(Elsevier BV, 2014-01) Okuyan, E.; Güdükbay, Uğur
We present a revised version of the BilKristal tool of Okuyan et al. (2007). We converted the development environment into Microsoft Visual Studio 2005 in order to resolve compatibility issues. We added multi-core CPU support and improvements are made to graphics functions in order to improve performance. Discovered bugs are fixed and exporting functionality to a material visualization tool is added.
Open Access
BilKristal 4.0: A tool for crystal parameters extraction and defect quantification
(Elsevier, 2015) Okuyan, E.; Okuyan, C.
In this paper, we present a revised version of BilKristal 3.0 tool. Raycast screenshot functionality is added to provide improved visual analysis. We added atomic distance analysis functionality to assess crystalline defects. We improved visualization capabilities by adding high level cut function definitions. Discovered bugs are fixed and small performance optimizations are made. © 2015 Elsevier B.V. All rights reserved.
Open Access
Growth of high crystalline quality semi-insulating GaN layers for high electron mobility transistor applications
(2006) Yu H.; Caliskan, D.; Özbay, Ekmel
Semi-insulating character (sheet resistivity of 3.26 × 10 11 Ω/sq) of thick GaN layers was developed for AlGaN/GaN high electron mobility transistor (HEMT) applications on an AlN buffer layer. Electrical and structural properties were characterized by a dark current-voltage transmission line model, x-ray diffraction, and atomic force microscope measurements. The experimental results showed that compared to semi-insulating GaN grown on low temperature GaN nucleation, the crystal quality as well as surface morphology were remarkably improved. It was ascribed to the utilization of a high quality insulating AlN buffer layer and the GaN initial coalescence growth mode. Moreover, the significant increase of electron mobility in a HEMT structure suggests that this is a very promising method to obtain high performance AlGaN/GaN HEMT structures on sapphire substrates. © 2006 American Institute of Physics.
Open Access
Lattice dynamics and elastic properties of lanthanum monopnictides
(2008) Gökoǧlu G.; Erkişi, A.
In this study, first principles calculation results of the second order elastic constants and lattice dynamics of two lanthanum monopnictides, LaN and LaBi, which crystallize in rock-salt structure (B1 phase), are presented. Calculations were based on plane wave basis sets and pseudopotential methods in the framework of Density Functional Theory (DFT) with generalized gradient approximation. Elastic constants are calculated by tetragonal and orthorhombic distortions on cubic structure. Phonon dispersion spectra was constructed in the linear response approach of the Density Functional Perturbation Theory (DFPT). The complete phonon softening with negative frequencies and large elastic anisotropy were observed for LaN single crystal as a sign of the structural instability. The phonon dispersion curve for LaBi is typical for lanthanum monopnictides and does not show any anomalous physical property. The calculated structural quantities for both LaN and LaBi systems agree well with the available experimental and theoretical data. © 2008 Elsevier Ltd. All rights reserved.
Open Access
Pattern information extraction from crystal structures
(2005) Okuyan, Erhan
Determining crystal structure parameters of a material is a quite important issue in crystallography. Knowing the crystal structure parameters helps to understand physical behavior of material. For complex structures, particularly for materials which also contain local symmetry as well as global symmetry, obtaining crystal parameters can be quite hard. This work provides a tool that will extract crystal parameters such as primitive vectors, basis vectors and space group from atomic coordinates of crystal structures. A visualization tool for examining crystals is also provided. Accordingly, this work presents a useful tool that help crystallographers, chemists and material scientists to analyze crystal structures efficiently.
Open Access
Pattern information extraction from crystal structures
(Elsevier BV, 2007) Okuyan, E.; Güdükbay, Uğur; Gülseren, O.
Determining the crystal structure parameters of a material is an important issue in crystallography and material science. Knowing the crystal structure parameters helps in understanding the physical behavior of material. It can be difficult to obtain crystal parameters for complex structures, particularly those materials that show local symmetry as well as global symmetry. This work provides a tool that extracts crystal parameters such as primitive vectors, basis vectors and space groups from the atomic coordinates of crystal structures. A visualization tool for examining crystals is also provided. Accordingly, this work could help crystallographers, chemists and material scientists to analyze crystal structures efficiently. Program summary: Title of program: BilKristal. Catalogue identifier: ADYU_v1_0. Program summary URL: http://cpc.cs.qub.ac.uk/summaries/ADYU_v1_0. Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland. Licensing provisions: None. Programming language used: C, C++, Microsoft .NET Framework 1.1 and OpenGL Libraries. Computer: Personal Computers with Windows operating system. Operating system: Windows XP Professional. RAM: 20-60 MB. No. of lines in distributed program, including test data, etc.:899 779. No. of bytes in distributed program, including test date, etc.:9 271 521. Distribution format:tar.gz. External routines/libraries: Microsoft .NET Framework 1.1. For visualization tool, graphics card driver should also support OpenGL. Nature of problem: Determining crystal structure parameters of a material is a quite important issue in crystallography. Knowing the crystal structure parameters helps to understand physical behavior of material. For complex structures, particularly, for materials which also contain local symmetry as well as global symmetry, obtaining crystal parameters can be quite hard. Solution method: The tool extracts crystal parameters such as primitive vectors, basis vectors and identify the space group from atomic coordinates of crystal structures. Restrictions: Assumptions are explained in the paper. However, none of them can be considered as a restriction onto the complexity of the problem. Running time: All the examples presented in the paper take less than 30 seconds on a 2.4 GHz Pentium 4 computer. © 2007 Elsevier B.V. All rights reserved.
Open Access
Physics and applications of photonic nanocrystals
(Inderscience Publishers, 2004) Özbay, Ekmel; Güven, Kaan; Aydın, Koray; Bayındır, Mehmet
Photonic nanocrystals are periodic dielectric or metallic structures having photonic bands in analogy to electronic bands of semiconductors. The presence of photonic band-gaps, where the propagation of photons of certain frequencies is prohibited, and the variety of photon dispersions give rise to novel and unusual optical phenomena. Consequently, photonic crystals are now envisaged as an essential building block of future photonic devices. This paper aims to provide a review of contemporary developments on the physics and applications of photonic crystals with an emphasis on optical properties of coupled microcavity waveguides and on the negative refraction phenomenon. The enhancement of spontaneous emission in a silicon nitride photonic nanocrystal is investigated in detail. Both the negative refraction of a Gaussian beam and the focusing of a microwave point source through a photonic crystal slab with subwavelength resolution are studied experimentally.
Open Access
A tool for pattern information extraction and defect quantification from crystal structures
(Elsevier, 2015) Okuyan, E.; Okuyan, E.
In this paper, we present a revised version of BilKristal 2.0 tool. We added defect quantification functionality to assess crystalline defects. We improved visualization capabilities by adding transparency support and runtime visibility sorting. Discovered bugs are fixed and small performance optimizations are made. New version program summary Program title: BilKristal 3.0 Catalogue identifier: ADYU-v3-0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADYU-v3-0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 1868 923 No. of bytes in distributed program, including test data, etc.: 8854 507 Distribution format: tar.gz Programming language: C, C++, Microsoft.NET Framework 2.0 and OpenGL Libraries. Computer: Personal Computers with Windows operating system. Operating system: Windows XP or higher. RAM: 20-60 Megabytes. Classification: 8. Catalogue identifier of previous version: ADYU-v2-0 Journal reference of previous version: Comput. Phys. Comm. 185 (2014) 442 External routines: Microsoft.NET Framework 2.0. For the visualization tool, graphics card driver should also support OpenGL. Does the new version supersede the previous version?: Yes Nature of problem: Determining the crystal structure parameters of a material is a very important issue in crystallography. Knowing the crystal structure parameters helps the understanding of the physical behavior of material. For complex structures, particularly for materials which also contain local symmetry as well as global symmetry, obtaining crystal parameters can be very hard. Solution method: The tool extracts crystal parameters such as primitive vectors, basis vectors and identifies the space group from atomic coordinates of crystal structures. Reasons for new version: Additional features, Compatibility issues with newer development environments, Performance optimizations, Minor bug corrections. Summary of revisions:Defect quantification capability is added. The tool can process the imperfect crystal structures, finds and quantifies the crystalline defects. The tool is capable of finding positional defects, vacancy defects, substitutional impurities and interstitial impurities. The algorithms presented in [3] are used for defect quantification implementation.Transparency support is added to the visualization tool. Users are now allowed to set the transparency of each atom type individually.Runtime visibility sorting functionality is added to facilitate correct transparency computations.Visual Studio 2012 support is added. Visual Studio 2012 specific project files are created and the project is tested with this development environment.In visualization tool, an unused log file was created. This issue is corrected.In visualization tool, some OpenGL calls which are executed at every draw are changed to be executed only when they are needed, improving the visualization performance.Restrictions: Assumptions are explained in [1,2]. However, none of them can be considered as a restriction onto the complexity of the problem. Running time: The tool was able to process input files with more than a million atoms in less than 20 s on a PC with an Athlon quad-core CPU at 3.2 GHz using the default parameter values. References: [1] Erhan Okuyan, Ugur Güdükbay, Oguz Gülseren, Pattern information extraction from crystal structures, Comput. Phys. Comm. 176 (2007) 486. [2] Erhan Okuyan, Ugur Güdükbay, BilKristal 2.0: A tool for pattern information extraction from crystal structures, Comput. Phys. Comm. 185 (2014) 442. [3] Erhan Okuyan, Ugur Güdükbay, Ceyhun Bulutay, Karl-Heinz Heinig, MaterialVis: material visualization tool using direct volume and surface rendering techniques, J. Mol. Graphics Model. 50201450-60. © 2014 The Authors.