Browsing by Subject "Cell membranes"

Now showing 1 - 8 of 8

Open Access
Artificial neural network modeling and simulation of in-vitro nanoparticle-cell interactions
(American Scientific Publishers, 2014) Cenk, N.; Budak, G.; Dayanik, S.; Sabuncuoglu, I.
In this research a prediction model for the cellular uptake efficiency of nanoparticles (NPs), which is the rate that NPs adhere to a cell surface or enter a cell, is investigated via an artificial neural network (ANN) method. An appropriate mathematical model for the prediction of the cellular uptake rate of NPs will significantly reduce the number of time-consuming experiments to determine which of the thousands of possible variables have an impact on NP uptake rate. Moreover, this study constitutes a basis for targeted drug delivery and cell-level detection, treatment and diagnosis of existing pathologies through simulating NP-cell interactions. Accordingly, this study will accelerate nanomedicine research. Our research focuses on building a proper ANN model based on a multilayered feed-forward back-propagation algorithm that depends on NP type, size, surface charge, concentration and time for prediction of cellular uptake efficiency. The NP types for in-vitro NP-healthy cell interaction analysis are polymethyl methacrylate (PMMA), silica and polylactic acid (PLA), all of whose shapes are spheres. The proposed ANN model has been developed on MATLAB Programming Language by optimizing a number of hidden layers (HLs), node numbers and training functions. The datasets are obtained from in-vitro NP-cell interaction experiments conducted by Nanomedicine and Advanced Technology Research Center. The dispersion characteristics and cell interactions with different NPs in organisms are explored using an optimal ANN prediction model. Simulating the possible interactions of targeted NPs with cells via an ANN model will be faster and cheaper compared to the excessive experimentation currently necessary.
Open Access
Bioactive nanomaterials for neural engineering
(Springer, Cham, 2016) Sever, Melike; Uyan, İdil; Tekinay, Ayse B.; Güler, Mustafa O.; Zhang, L. G.; Kaplan, D. L.
Nervous system is a highly complex interconnected network and higher organisms including humans have limited neural regeneration capacity. Neurodegenerative diseases result in significant cognitive, sensory, or motor impairments. Following an injury in the neural network, there is a balance between promotion and inhibition of regeneration and this balance is shifted to different directions in central nervous system (CNS) and peripheral nervous system (PNS). More regeneration capacity is observed in the PNS compared to the CNS. Although, several mechanisms play roles in the inhibitory and growth-promoting natures of the CNS and PNS, extracellular matrix (ECM) elements are key players in this process. ECM is a three-dimensional environment where the cells migrate, proliferate, and differentiate (Rutka et al. 1988; Pan et al. 1997). After a comprehensive investigation of the interactions between the ECM proteins and cell receptors, the ECM environment was found to regulate significant cellular processes such as survival, proliferation, differentiation, and migration (Yurchenco and Cheng 1994; Aszodi et al. 2006). Its components have major roles not only in neurogenesis during development of the nervous system but also in normal neural functioning during adulthood (Hubert et al. 2009).
Open Access
Chromium(VI) biosorption and bioaccumulation by Live and acid-modified biomass of a novel morganella morganii isolate
(Taylor and Francis, 2014) Ergul-Ulger, Z.; Ozkan A.D.; Tunca E.; Atasagun, S.; Tekinay, T.
Conventional methods of chromium removal are often insufficient for the remediation of chromium-contaminated natural environments, necessitating the development of alternative strategies. In this paper, we report the isolation of a novel Morganella morganii strain capable of reducing hexavalent chromium to its less-toxic and less-soluble trivalent form. Cr(VI) reduction by this strain was evaluated in both acidic environments and conditions reflecting natural freshwater sources. The isolate achieved equilibrium within 3 h and displayed a specific uptake rate of 24.30 ± 1.67 mg Cr(VI)/g biomass following HCl treatment. Without acid treatment, a reduction of over 90% was recorded within 72 h for an initial Cr(VI) concentration 20 mg/L, corresponding to a Cr(VI) removal capacity of 19.36 ± 1.89 mg/g. Absorption data of acid-treated STB5 biomass most closely followed the Toth and Langmuir models. FTIR results indicate that hydroxyl groups and extracellular or cell membrane polysaccharides may be potential adsorption sites for hexavalent chromium. Our results suggest that the isolate may be used in situ for treatment of polluted freshwater environments. Copyright © Taylor & Francis Group, LLC.
Open Access
Dikgen frekans bölmeli çoklu erişim sistemlerinde telsiz erişim terminallerinin işbirliği
(IEEE, 2009-04) Tokel, Turgut Barış; Aktaş, Defne
Gelecek nesil kablosuz iletişim sistemlerinde öngörülen veri hızlarına ulaşabilmek için bu sistemlerde frekans yeniden kullanım oranının 1 olmasına ihtiyaç¸ vardır, bu ise özellikle hücre sınırlarındaki kullanıcıların önemli ölçüde hücreler arası girişime maruz kalmalarına neden olur. Telsiz erişim terminalleri arasında işbirliği hücreler arası girişimin azaltılmasında önemli bir rol oynamaktadır. Bu bildiride çok hücreli, çok girdili çok çıktılı, dikgen frekans bölmeli çoklu erişim sistemlerinde telsiz erişim terminallerinden kullanıcılara işbirlikli veri iletimi problemini ele alıyoruz. Telsiz erişim terminallerinin aralarında kısıtlı ileti paylaşımı ile çizelgeleme ve veri iletimi yaptıkları etkin bir işbirlikli algoritma öneriyoruz.
Open Access
Evidence-Based Clinical Use of Nanoscale Extracellular Vesicles in Nanomedicine
(American Chemical Society, 2016-03) Fais, S.; O'Driscoll, L.; Borras, F. E.; Buzas, E.; Camussi, G.; Cappello, F.; Carvalho, J.; Cordeiro Da Silva, A.; Del Portillo, H.; El Andaloussi, S.; Ficko Trček, T.; Furlan, R.; Hendrix, A.; Gursel, I.; Kralj-Iglic, V.; Kaeffer, B.; Kosanovic, M.; Lekka, M. E.; Lipps, G.; Logozzi, M.; Marcilla, A.; Sammar, M.; Llorente, A.; Nazarenko, I.; Oliveira, C.; Pocsfalvi, G.; Rajendran, L.; Raposo, G.; Rohde, E.; Siljander, P.; Van, N. G.; Vasconcelos, M. H.; Yáñez-Mó, M.; Yliperttula, M. L.; Zarovni, N.; Zavec, A. B.; Giebel, B.
Recent research has demonstrated that all body fluids assessed contain substantial amounts of vesicles that range in size from 30 to 1000 nm and that are surrounded by phospholipid membranes containing different membrane microdomains such as lipid rafts and caveolae. The most prominent representatives of these so-called extracellular vesicles (EVs) are nanosized exosomes (70-150 nm), which are derivatives of the endosomal system, and microvesicles (100-1000 nm), which are produced by outward budding of the plasma membrane. Nanosized EVs are released by almost all cell types and mediate targeted intercellular communication under physiological and pathophysiological conditions. Containing cell-type-specific signatures, EVs have been proposed as biomarkers in a variety of diseases. Furthermore, according to their physical functions, EVs of selected cell types have been used as therapeutic agents in immune therapy, vaccination trials, regenerative medicine, and drug delivery. Undoubtedly, the rapidly emerging field of basic and applied EV research will significantly influence the biomedicinal landscape in the future. In this Perspective, we, a network of European scientists from clinical, academic, and industry settings collaborating through the H2020 European Cooperation in Science and Technology (COST) program European Network on Microvesicles and Exosomes in Health and Disease (ME-HAD), demonstrate the high potential of nanosized EVs for both diagnostic and therapeutic (i.e., theranostic) areas of nanomedicine.
Open Access
Interaction between a cMUT cell and a liquid medium around the parallel resonance frequency
(IEEE, 2007-10) Şenlik, Muhammed N.; Atalar, Abdullah; Olçum, Selim
In this paper, we present how a capacitive micromachined ultrasonic transducer (cMUT) couples to the immersion medium, based on an accurate parametric model. We show that the velocity of cMUT membrane can be written as a sum of an average velocity term and a residual term. We demonstrate that this residual term carries non-zero energy at the parallel resonance frequency by investigating the interaction between the cMUT cell and a liquid medium. We develop a model that is also applicable around the parallel resonance frequency. © 2007 IEEE.
Open Access
Pap smear test görüntülerinde hücre çekirdeklerinin bölütlenmesi
(IEEE, 2009-04) Kale, Aslı; Aksoy, Selim; Önder, S.
Cervical cancer is a preventable disease and the dysplasia it causes can be scanned by using a pap smear test. It can be beneficial to develop a computer-assisted diagnosis system to make the pap smear test robust and widespread. The most fundamental part of such a system is the segmentation of nuclei and cytoplasm in cervical cell images. The aim of this study is to segment the nuclei in such images. First, markers on the nuclei are found by using mathematical morphology operations. Based on the obtained markers, marker-based watershed segmentation and balloon snake model are applied to find the nuclei contours in a data set consisting of cervical cell images. The data set is composed of six classes ranging according to the dysplasia degree of the cells. The results are evaluated according to the relative distance error measure, and the strengths and weakness of the methods are discussed. ©2009 IEEE.
Open Access
Transmission Near-Field Scanning Optical Microscopy Investigation on Cellular Uptake Behavior of Iron Oxide Nanoparticles
(2012) Zhang, Y.; Kyle J.R.; Penchev, M.; Yazdanpanah V.; Yu J.; Li, Y.; Yang, M.; Budak G.; Özbay, Ekmel; Ozkan, M.; Ozkan, C.S.
Cellular uptake behavior of iron oxide nanoparticles is investigated using a transmission near-field scanning optical microscopy (NSOM) without the need of fluorescent labeling. By using the transmission NSOM system, we could simultaneously explore the near-field optical analysis of the cell interior and record the topographic information of the cell surface. The cell endocytosis of iron oxide nanoparticles by normal breast MCF10A cells is first studied by this transmission NSOM system, and this dual functional nanoscale-resolution microscopy shows the capability of mapping the spatial localization of nanoparticles in/outside cell surface without the need of fluorescence labeling. Nanoscale optical signature patterns for iron oxide nanoparticle-loaded vesicles inside the cells were observed and analyzed. © Springer Science+Business Media, LLC 2012.