Browsing by Author "Wang, Y."

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Open Access
Anisotropic stimulated emission from aligned CdSe/CdS dot-in-rods
(IEEE, 2014-10) Gao, Y.; Ta, V. D.; Zhao, X.; Wang, Y.; Chen, R.; Zhao, Y.; Dang, C.; Sun, X.; Sun, H.; Demir, Hilmi Volkan
Anisotropic optical properties of CdSe/CdS dot-in-rods loaded in a capillary tube are demonstrated, suggesting nanorods' alignment with a microfluidic approach. Polarized emissions from photoluminescence and whispering gallery mode lasing show promising applications for lighting and displays. © 2014 IEEE.
Open Access
Blocking PI3K p110β attenuates development of PTEN-deficient castration-resistant prostate cancer
(American Association for Cancer Research, 2022-01-26) Gao, X.; Wang, Y.; Ribeiro, C. F.; Manokaran, C.; Chang, H.; Von, T.; Rodrigues, S.; Çizmecioğlu, Onur; Jia, S.; Korpal, M.; Korn, J. M.; Wang, Z.; Schmit, F.; Jiang, L.; Pagliarini, R.; Yang, Y.; Sethi, I.; Signoretti, S.; Yuan, G.; Loda, M.; Zhao, J. J.; Roberts, T. M.
A common outcome of androgen deprivation in prostate cancer therapy is disease relapse and progression to castration-resistant prostate cancer (CRPC) via multiple mechanisms. To gain insight into the recent clinical findings that highlighted genomic alterations leading to hyperactivation of PI3K, we examined the roles of the commonly expressed p110 catalytic isoforms of PI3K in a murine model of Pten-null invasive CRPC. While blocking p110α had negligible effects in the development of Pten-null invasive CRPC, either genetic or pharmacologic perturbation of p110β dramatically slowed CRPC initiation and progression. Once fully established, CRPC tumors became partially resistant to p110β inhibition, indicating the acquisition of new dependencies. Driven by our genomic analyses highlighting potential roles for the p110β/RAC/PAK1 and β-catenin pathways in CRPC, we found that combining p110β with RAC/PAK1 or tankyrase inhibitors significantly reduced the growth of murine and human CRPC organoids in vitro and in vivo. Because p110β activity is dispensable for most physiologic processes, our studies support novel therapeutic strategies both for preventing disease progression into CRPC and for treating CRPC.
Embargo
Can investors’ informed trading predict cryptocurrency returns? Evidence from machine learning
(Elsevier Inc., 2022-05-24) Wang, Y.; Wang, C.; Şensoy, Ahmet; Yao, S.; Cheng, F.
As an emerging asset, cryptocurrencies have attracted more and more attention from investors and researchers in recent years. With the gradual convergence of the investors in cryptocurrency and traditional financial markets, the research on investor trading behavior from the perspective of microstructure has become increasingly important in cryptocurrency market. In this paper, we study whether investors’ informed trading behavior can significantly predict cryptocurrency returns. We use various machine learning algorithms to verify the contribution of informed trading to the predictability of cryptocurrency returns. The results show that informed trading plays a role in the prediction of some individual cryptocurrency returns, but it cannot significantly improve the prediction accuracy in an average sense of the whole market. The lack of market supervision of cryptocurrency market may be the main factor for relatively low efficiency of this market, and policymakers need to pay attention to it.
Open Access
A global reference for human genetic variation
(Nature Publishing Group, 2015) Auton, A.; Abecasis, G. R.; Altshuler, D. M.; Durbin, R. M.; Bentley, D. R.; Chakravarti, A.; Clark, A. G.; Donnelly, P.; Eichler, E. E.; Flicek, P.; Gabriel, S. B.; Gibbs, R. A.; Green, E. D.; Hurles, M. E.; Knoppers, B. M.; Korbel, J. O.; Lander, E. S.; Lee, C.; Lehrach, H.; Mardis, E. R.; Marth, G. T.; McVean, G. A.; Nickerson, D. A.; Schmidt, J. P.; Sherry, S. T.; Wang, J.; Wilson, R. K.; Boerwinkle, E.; Doddapaneni, H.; Han, Y.; Korchina, V.; Kovar, C.; Lee, S.; Muzny, D.; Reid, J. G.; Zhu, Y.; Chang, Y.; Feng, Q.; Fang, X.; Guo, X.; Jian, M.; Jiang, H.; Jin, X.; Lan, T.; Li, G.; Li, J.; Li, Y.; Liu, S.; Liu, X.; Lu, Y.; Ma, X.; Tang, M.; Wang, B.; Wang, G.; Wu, H.; Wu, R.; Xu, X.; Yin, Y.; Zhang, D.; Zhang, W.; Zhao, J.; Zhao, M.; Zheng, X.; Gupta, N.; Gharani, N.; Toji, L. H.; Gerry, N. P.; Resch, A. M.; Barker, J.; Clarke, L.; Gil, L.; Hunt, S. E.; Kelman, G.; Kulesha, E.; Leinonen, R.; McLaren, W. M.; Radhakrishnan, R.; Roa, A.; Smirnov, D.; Smith, R. E.; Streeter, I.; Thormann, A.; Toneva, I.; Vaughan, B.; Zheng-Bradley, X.; Grocock, R.; Humphray, S.; James, T.; Kingsbury, Z.; Sudbrak, R.; Albrecht, M. W.; Amstislavskiy, V. S.; Borodina, T. A.; Lienhard, M.; Mertes, F.; Sultan, M.; Timmermann, B.; Yaspo, Marie-Laure; Fulton, L.; Ananiev, V.; Belaia, Z.; Beloslyudtsev, D.; Bouk, N.; Chen, C.; Church, D.; Cohen, R.; Cook, C.; Garner, J.; Hefferon, T.; Kimelman, M.; Liu, C.; Lopez, J.; Meric, P.; O'Sullivan, C.; Ostapchuk, Y.; Phan, L.; Ponomarov, S.; Schneider, V.; Shekhtman, E.; Sirotkin, K.; Slotta, D.; Zhang, H.; Balasubramaniam, S.; Burton, J.; Danecek, P.; Keane, T. M.; Kolb-Kokocinski, A.; McCarthy, S.; Stalker, J.; Quail, M.; Davies, C. J.; Gollub, J.; Webster, T.; Wong, B.; Zhan, Y.; Campbell, C. L.; Kong, Y.; Marcketta, A.; Yu, F.; Antunes, L.; Bainbridge, M.; Sabo, A.; Huang, Z.; Coin, L. J. M.; Fang, L.; Li, Q.; Li, Z.; Lin, H.; Liu, B.; Luo, R.; Shao, H.; Xie, Y.; Ye, C.; Yu, C.; Zhang, F.; Zheng, H.; Zhu, H.; Alkan, C.; Dal, E.; Kahveci, F.; Garrison, E. P.; Kural, D.; Lee, W. P.; Leong, W. F.; Stromberg, M.; Ward, A. N.; Wu, J.; Zhang, M.; Daly, M. J.; DePristo, M. A.; Handsaker, R. E.; Banks, E.; Bhatia, G.; Del Angel, G.; Genovese, G.; Li, H.; Kashin, S.; McCarroll, S. A.; Nemesh, J. C.; Poplin, R. E.; Yoon, S. C.; Lihm, J.; Makarov, V.; Gottipati, S.; Keinan, A.; Rodriguez-Flores, J. L.; Rausch, T.; Fritz, M. H.; Stütz, A. M.; Beal, K.; Datta, A.; Herrero, J.; Ritchie, G. R. S.; Zerbino, D.; Sabeti, P. C.; Shlyakhter, I.; Schaffner, S. F.; Vitti, J.; Cooper, D. N.; Ball, E. V.; Stenson, P. D.; Barnes, B.; Bauer, M.; Cheetham, R. K.; Cox, A.; Eberle, M.; Kahn, S.; Murray, L.; Peden, J.; Shaw, R.; Kenny, E. E.; Batzer, M. A.; Konkel, M. K.; Walker, J. A.; MacArthur, D. G.; Lek, M.; Herwig, R.; Ding, L.; Koboldt, D. C.; Larson, D.; Ye, K.; Gravel, S.; Swaroop, A.; Chew, E.; Lappalainen, T.; Erlich, Y.; Gymrek, M.; Willems, T. F.; Simpson, J. T.; Shriver, M. D.; Rosenfeld, J. A.; Bustamante, C. D.; Montgomery, S. B.; De La Vega, F. M.; Byrnes, J. K.; Carroll, A. W.; DeGorter, M. K.; Lacroute, P.; Maples, B. K.; Martin, A. R.; Moreno-Estrada, A.; Shringarpure, S. S.; Zakharia, F.; Halperin, E.; Baran, Y.; Cerveira, E.; Hwang, J.; Malhotra, A.; Plewczynski, D.; Radew, K.; Romanovitch, M.; Zhang, C.; Hyland, F. C. L.; Craig, D. W.; Christoforides, A.; Homer, N.; Izatt, T.; Kurdoglu, A. A.; Sinari, S. A.; Squire, K.; Xiao, C.; Sebat, J.; Antaki, D.; Gujral, M.; Noor, A.; Ye, K.; Burchard, E. G.; Hernandez, R. D.; Gignoux, C. R.; Haussler, D.; Katzman, S. J.; Kent, W. J.; Howie, B.; Ruiz-Linares, A.; Dermitzakis, E. T.; Devine, S. E.; Kang, H. M.; Kidd, J. M.; Blackwell, T.; Caron, S.; Chen, W.; Emery, S.; Fritsche, L.; Fuchsberger, C.; Jun, G.; Li, B.; Lyons, R.; Scheller, C.; Sidore, C.; Song, S.; Sliwerska, E.; Taliun, D.; Tan, A.; Welch, R.; Wing, M. K.; Zhan, X.; Awadalla, P.; Hodgkinson, A.; Li, Y.; Shi, X.; Quitadamo, A.; Lunter, G.; Marchini, J. L.; Myers, S.; Churchhouse, C.; Delaneau, O.; Gupta-Hinch, A.; Kretzschmar, W.; Iqbal, Z.; Mathieson, I.; Menelaou, A.; Rimmer, A.; Xifara, D. K.; Oleksyk, T. K.; Fu, Y.; Liu, X.; Xiong, M.; Jorde, L.; Witherspoon, D.; Xing, J.; Browning, B. L.; Browning, S. R.; Hormozdiari, F.; Sudmant, P. H.; Khurana, E.; Tyler-Smith, C.; Albers, C. A.; Ayub, Q.; Chen, Y.; Colonna, V.; Jostins, L.; Walter, K.; Xue, Y.; Gerstein, M. B.; Abyzov, A.; Balasubramanian, S.; Chen, J.; Clarke, D.; Fu, Y.; Harmanci, A. O.; Jin, M.; Lee, D.; Liu, J.; Mu, X. J.; Zhang, J.; Zhang, Y.; Hartl, C.; Shakir, K.; Degenhardt, J.; Meiers, S.; Raeder, B.; Casale, F. P.; Stegle, O.; Lameijer, E. W.; Hall, I.; Bafna, V.; Michaelson, J.; Gardner, E. J.; Mills, R. E.; Dayama, G.; Chen, K.; Fan, X.; Chong, Z.; Chen, T.; Chaisson, M. J.; Huddleston, J.; Malig, M.; Nelson, B. J.; Parrish, N. F.; Blackburne, B.; Lindsay, S. J.; Ning, Z.; Zhang, Y.; Lam, H.; Sisu, C.; Challis, D.; Evani, U. S.; Lu, J.; Nagaswamy, U.; Yu, J.; Li, W.; Habegger, L.; Yu, H.; Cunningham, F.; Dunham, I.; Lage, K.; Jespersen, J. B.; Horn, H.; Kim, D.; Desalle, R.; Narechania, A.; Sayres, M. A. W.; Mendez, F. L.; Poznik, G. D.; Underhill, P. A.; Mittelman, D.; Banerjee, R.; Cerezo, M.; Fitzgerald, T. W.; Louzada, S.; Massaia, A.; Yang, F.; Kalra, D.; Hale, W.; Dan, X.; Barnes, K. C.; Beiswanger, C.; Cai, H.; Cao, H.; Henn, B.; Jones, D.; Kaye, J. S.; Kent, A.; Kerasidou, A.; Mathias, R.; Ossorio, P. N.; Parker, M.; Rotimi, C. N.; Royal, C. D.; Sandoval, K.; Su, Y.; Tian, Z.; Tishkoff, S.; Via, M.; Wang, Y.; Yang, H.; Yang, L.; Zhu, J.; Bodmer, W.; Bedoya, G.; Cai, Z.; Gao, Y.; Chu, J.; Peltonen, L.; Garcia-Montero, A.; Orfao, A.; Dutil, J.; Martinez-Cruzado, J. C.; Mathias, R. A.; Hennis, A.; Watson, H.; McKenzie, C.; Qadri, F.; LaRocque, R.; Deng, X.; Asogun, D.; Folarin, O.; Happi, C.; Omoniwa, O.; Stremlau, M.; Tariyal, R.; Jallow, M.; Joof, F. S.; Corrah, T.; Rockett, K.; Kwiatkowski, D.; Kooner, J.; Hien, T. T.; Dunstan, S. J.; ThuyHang, N.; Fonnie, R.; Garry, R.; Kanneh, L.; Moses, L.; Schieffelin, J.; Grant, D. S.; Gallo, C.; Poletti, G.; Saleheen, D.; Rasheed, A.; Brooks, L. D.; Felsenfeld, A. L.; McEwen, J. E.; Vaydylevich, Y.; Duncanson, A.; Dunn, M.; Schloss, J. A.
The 1000 Genomes Project set out to provide a comprehensive description of common human genetic variation by applying whole-genome sequencing to a diverse set of individuals from multiple populations. Here we report completion of the project, having reconstructed the genomes of 2,504 individuals from 26 populations using a combination of low-coverage whole-genome sequencing, deep exome sequencing, and dense microarray genotyping. We characterized a broad spectrum of genetic variation, in total over 88 million variants (84.7 million single nucleotide polymorphisms (SNPs), 3.6 million short insertions/deletions (indels), and 60,000 structural variants), all phased onto high-quality haplotypes. This resource includes >99% of SNP variants with a frequency of >1% for a variety of ancestries. We describe the distribution of genetic variation across the global sample, and discuss the implications for common disease studies. © 2015 Macmillan Publishers Limited. All rights reserved.
Open Access
Improved performance of organic light-emitting diodes with MoO3 interlayer by oblique angle deposition
(Optical Society of America, 2011) Liu, S. W.; Divayana, Y.; Sun, X. W.; Wang, Y.; Leck, K. S.; Demir, Hilmi Volkan
We fabricated and demonstrated improved organic light emitting diodes (OLEDs) in a thin film architecture of indium tin oxide (ITO)/molybdenum trioxide (MoO3) (20 nm)/ N,N'-Di(naphth-2-yl)-N,N'-diphenyl-benzidine (NPB) (50 nm)/tris-(8-hydroxyquinoline) (Alq(3)) (70 nm)/Mg:Ag (200 nm) using an oblique angle deposition technique by which MoO3 was deposited at oblique angles (theta) with respect to the surface normal. It was found that, without sacrificing the power efficiency of the device, the device current efficiency and external quantum efficiency were significantly enhanced at an oblique deposition angle of theta = 60 degrees for MoO3. (C) 2011 Optical Society of America
Open Access
An indium-free transparent resistive switching random access memory
(IEEE, 2011-02-28) Zheng, K.; Sun, X. W.; Zhao, J. L.; Wang, Y.; Yu, H. Y.; Demir, Hilmi Volkan; Teo, K. L.
We report an indium-free transparent resistive switching random access memory device based on GZO-Ga(2)O(3)-ZnO-Ga(2)O(3)-GZO structure by metal-organic chemical vapor deposition. The memory device shows good transmittance in the visible region and bipolar resistive switching behavior with good cycling characteristics and retention time under room temperature. The conduction and resistive switching mechanism was discussed based on filament theory.
Open Access
Influence of channel layer thickness on the electrical performances of inkjet-printed In-Ga-Zn oxide thin-film transistors
(IEEE, 2010-12-10) Wang, Y.; Sun, X. W.; Goh, G. K. L.; Demir, Hilmi Volkan; Yu, H. Y.
Inkjet-printed In-Ga-Zn oxide (IGZO) thin-film transistors (TFTs) with bottom-gate bottom-contact device architecture are studied in this paper. The impact of the IGZO film thickness on the performance of TFTs is investigated. The threshold voltage, field-effect mobility, on and off drain current, and subthreshold swing are strongly affected by the thickness of the IGZO film. With the increase in film thickness, the threshold voltage shifted from positive to negative, which is related to the depletion layer formed by the oxygen absorbed on the surface. The field-effect mobility is affected by the film surface roughness, which is thickness dependent. Our results show that there is an optimum IGZO thickness, which ensures the best TFT electrical performance. The best result is from a 55-nm-thick IGZO TFT, which showed a field-effect mobility in the saturation region of 1.41 cm(2)/V . s, a threshold voltage of 1 V, a drain current on/off ratio of approximately 4.3 x 10(7), a subthreshold swing of 384 mV/dec, and an off-current level lower than 1 pA.
Open Access
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
(Nature Publishing Group, 2014) Delaneau O.; Marchini J.; McVeanh G.A.; Donnelly P.; Lunter G.; Marchini J.L.; Myers, S.; Gupta-Hinch, A.; Iqbal, Z.; Mathieson I.; Rimmer, A.; Xifara, D.K.; Kerasidou, A.; Churchhouse, C.; Altshuler, D.M.; Gabriel, S.B.; Lander, E.S.; Gupta, N.; Daly, M.J.; DePristo, M.A.; Banks, E.; Bhatia G.; Carneiro, M.O.; Del Angel G.; Genovese G.; Handsaker, R.E.; Hartl, C.; McCarroll, S.A.; Nemesh J.C.; Poplin, R.E.; Schaffner, S.F.; Shakir, K.; Sabeti P.C.; Grossman, S.R.; Tabrizi, S.; Tariyal, R.; Li H.; Reich, D.; Durbin, R.M.; Hurles, M.E.; Balasubramaniam, S.; Burton J.; Danecek P.; Keane, T.M.; Kolb-Kokocinski, A.; McCarthy, S.; Stalker J.; Quail, M.; Ayub Q.; Chen, Y.; Coffey, A.J.; Colonna V.; Huang, N.; Jostins L.; Scally, A.; Walter, K.; Xue, Y.; Zhang, Y.; Blackburne, B.; Lindsay, S.J.; Ning, Z.; Frankish, A.; Harrow J.; Chris, T.-S.; Abecasis G.R.; Kang H.M.; Anderson P.; Blackwell, T.; Busonero F.; Fuchsberger, C.; Jun G.; Maschio, A.; Porcu, E.; Sidore, C.; Tan, A.; Trost, M.K.; Bentley, D.R.; Grocock, R.; Humphray, S.; James, T.; Kingsbury, Z.; Bauer, M.; Cheetham, R.K.; Cox, T.; Eberle, M.; Murray L.; Shaw, R.; Chakravarti, A.; Clark, A.G.; Keinan, A.; Rodriguez-Flores J.L.; De LaVega F.M.; Degenhardt J.; Eichler, E.E.; Flicek P.; Clarke L.; Leinonen, R.; Smith, R.E.; Zheng-Bradley X.; Beal, K.; Cunningham F.; Herrero J.; McLaren W.M.; Ritchie G.R.S.; Barker J.; Kelman G.; Kulesha, E.; Radhakrishnan, R.; Roa, A.; Smirnov, D.; Streeter I.; Toneva I.; Gibbs, R.A.; Dinh H.; Kovar, C.; Lee, S.; Lewis L.; Muzny, D.; Reid J.; Wang, M.; Yu F.; Bainbridge, M.; Challis, D.; Evani, U.S.; Lu J.; Nagaswamy, U.; Sabo, A.; Wang, Y.; Yu J.; Fowler G.; Hale W.; Kalra, D.; Green, E.D.; Knoppers, B.M.; Korbel J.O.; Rausch, T.; Sttz, A.M.; Lee, C.; Griffin L.; Hsieh, C.-H.; Mills, R.E.; Von Grotthuss, M.; Zhang, C.; Shi X.; Lehrach H.; Sudbrak, R.; Amstislavskiy V.S.; Lienhard, M.; Mertes F.; Sultan, M.; Timmermann, B.; Yaspo, M.L.; Herwig, S.R.; Mardis, E.R.; Wilson, R.K.; Fulton L.; Fulton, R.; Weinstock G.M.; Chinwalla, A.; Ding L.; Dooling, D.; Koboldt, D.C.; McLellan, M.D.; Wallis J.W.; Wendl, M.C.; Zhang Q.; Marth G.T.; Garrison, E.P.; Kural, D.; Lee W.-P.; Leong W.F.; Ward, A.N.; Wu J.; Zhang, M.; Nickerson, D.A.; Alkan, C.; Hormozdiari F.; Ko, A.; Sudmant P.H.; Schmidt J.P.; Davies, C.J.; Gollub J.; Webster, T.; Wong, B.; Zhan, Y.; Sherry, S.T.; Xiao, C.; Church, D.; Ananiev V.; Belaia, Z.; Beloslyudtsev, D.; Bouk, N.; Chen, C.; Cohen, R.; Cook, C.; Garner J.; Hefferon, T.; Kimelman, M.; Liu, C.; Lopez J.; Meric P.; Ostapchuk, Y.; Phan L.; Ponomarov, S.; Schneider V.; Shekhtman, E.; Sirotkin, K.; Slotta, D.; Zhang H.; Wang J.; Fang X.; Guo X.; Jian, M.; Jiang H.; Jin X.; Li G.; Li J.; Li, Y.; Liu X.; Lu, Y.; Ma X.; Tai, S.; Tang, M.; Wang, B.; Wang G.; Wu H.; Wu, R.; Yin, Y.; Zhang W.; Zhao J.; Zhao, M.; Zheng X.; Lachlan H.; Fang L.; Li Q.; Li, Z.; Lin H.; Liu, B.; Luo, R.; Shao H.; Wang, B.; Xie, Y.; Ye, C.; Yu, C.; Zheng H.; Zhu H.; Cai H.; Cao H.; Su, Y.; Tian, Z.; Yang H.; Yang L.; Zhu J.; Cai, Z.; Wang J.; Albrecht, M.W.; Borodina, T.A.; Auton, A.; Yoon, S.C.; Lihm J.; Makarov V.; Jin H.; Kim W.; Kim, K.C.; Gottipati, S.; Jones, D.; Cooper, D.N.; Ball, E.V.; Stenson P.D.; Barnes, B.; Kahn, S.; Ye, K.; Batzer, M.A.; Konkel, M.K.; Walker J.A.; MacArthur, D.G.; Lek, M.; Shriver, M.D.; Bustamante, C.D.; Gravel, S.; Kenny, E.E.; Kidd J.M.; Lacroute P.; Maples, B.K.; Moreno-Estrada, A.; Zakharia F.; Henn, B.; Sandoval, K.; Byrnes J.K.; Halperin, E.; Baran, Y.; Craig, D.W.; Christoforides, A.; Izatt, T.; Kurdoglu, A.A.; Sinari, S.A.; Homer, N.; Squire, K.; Sebat J.; Bafna V.; Ye, K.; Burchard, E.G.; Hernandez, R.D.; Gignoux, C.R.; Haussler, D.; Katzman, S.J.; Kent W.J.; Howie, B.; Ruiz-Linares, A.; Dermitzakis, E.T.; Lappalainen, T.; Devine, S.E.; Liu X.; Maroo, A.; Tallon L.J.; Rosenfeld J.A.; Michelson L.P.; Angius, A.; Cucca F.; Sanna, S.; Bigham, A.; Jones, C.; Reinier F.; Li, Y.; Lyons, R.; Schlessinger, D.; Awadalla P.; Hodgkinson, A.; Oleksyk, T.K.; Martinez-Cruzado J.C.; Fu, Y.; Liu X.; Xiong, M.; Jorde L.; Witherspoon, D.; Xing J.; Browning, B.L.; Hajirasouliha I.; Chen, K.; Albers, C.A.; Gerstein, M.B.; Abyzov, A.; Chen J.; Fu, Y.; Habegger L.; Harmanci, A.O.; Mu X.J.; Sisu, C.; Balasubramanian, S.; Jin, M.; Khurana, E.; Clarke, D.; Michaelson J.J.; OSullivan, C.; Barnes, K.C.; Gharani, N.; Toji L.H.; Gerry, N.; Kaye J.S.; Kent, A.; Mathias, R.; Ossorio P.N.; Parker, M.; Rotimi, C.N.; Royal, C.D.; Tishkoff, S.; Via, M.; Bodmer W.; Bedoya G.; Yang G.; You, C.J.; Garcia-Montero, A.; Orfao, A.; Dutil J.; Brooks L.D.; Felsenfeld, A.L.; McEwen J.E.; Clemm, N.C.; Guyer, M.S.; Peterson J.L.; Duncanson, A.; Dunn, M.; Peltonen L.
A major use of the 1000 Genomes Project (1000GP) data is genotype imputation in genome-wide association studies (GWAS). Here we develop a method to estimate haplotypes from low-coverage sequencing data that can take advantage of single-nucleotide polymorphism (SNP) microarray genotypes on the same samples. First the SNP array data are phased to build a backbone (or 'scaffold') of haplotypes across each chromosome. We then phase the sequence data 'onto' this haplotype scaffold. This approach can take advantage of relatedness between sequenced and non-sequenced samples to improve accuracy. We use this method to create a new 1000GP haplotype reference set for use by the human genetic community. Using a set of validation genotypes at SNP and bi-allelic indels we show that these haplotypes have lower genotype discordance and improved imputation performance into downstream GWAS samples, especially at low-frequency variants. © 2014 Macmillan Publishers Limited. All rights reserved.
Open Access
Modulating emission properties in a host–guest colloidal quantum well superlattice
(Wiley-VCH Verlag GmbH & Co. KGaA, 2021-12-19) Yu, J.; Sharma, Manoj; Wang, Y.; Delikanlı, S.; Baruj, Hamed Dehghanpour; Sharma, A.; Demir, Hilmi Volkan
Self-assembly of colloidal nanocrystals into ordered superlattices is a powerful approach to enable novel collective properties which are not available in individual colloids. However, to date, it remains a major challenge to develop a practical route to modulate such collective properties for potential photonic applications. Herein, it is shown that the collective emission properties in colloidal quantum well (CQW) superlattices, including emission color and anisotropy, can be effectively modulated in a binary host–guest architecture. The experimental and theoretical results reveal that excitons of the host (i.e., the undoped CQWs) generated by photoexcitation can be controllably harvested by the guest (i.e., the Cu-doped CQWs) for light emission, owing to an exciton hopping assisted exciton trapping process. Such a nano-building block with tunable collective optical properties may enlighten novel colloidal material-based photonic applications, including optical anti-counterfeiting, next-generation liquid crystal displays, and multifunctional biological markers.
Open Access
Multicolor lasing prints
(American Institute of Physics Inc., 2015) Ta V.D.; Yang, S.; Wang, Y.; Gao, Y.; He, T.; Chen, R.; Demir, Hilmi Volkan; Sun H.
This work demonstrates mass production of printable multi-color lasing microarrays based on uniform hemispherical microcavities on a distributed Bragg reflector using inkjet technique. By embedding two different organic dyes into these prints, optically pumped whispering gallery mode microlasers with lasing wavelengths in green and red spectral ranges are realized. The spectral linewidth of the lasing modes is found as narrow as 0.11 nm. Interestingly, dual-color lasing emission in the ranges of 515-535 nm and 585-605 nm is simultaneously achieved by using two different dyes with certain ratios. Spectroscopic measurements elucidate the energy transfer process from the green dye (donor) to the red one (acceptor) with an energy transfer efficiency up to 80% in which the nonradiative Förster resonance energy transfer dominates. As such, the acceptor lasing in the presence of donor exhibits a significantly lower (∼2.5-fold) threshold compared with that of the pure acceptor lasing with the same concentration. © 2015 AIP Publishing LLC.
Open Access
Near resonant third-order optical nonlinearities of colloidal InP/ZnS quantum dots
(AIP Publishing, 2013) Wang, Y.; Yang, X.; He, T. C.; Gao, Y.; Demir, Hilmi Volkan; Sun, X. W.; Sun, H. D.
We have investigated the third-order optical nonlinearities of high-quality colloidal InP/ZnS core-shell quantum dots (QDs) using Z-scan technique with femtosecond pulses. The two-photon absorption cross-sections as high as 6.2 × 103 GM are observed at 800 nm (non-resonant regime) in InP/ZnS QDs with diameter of 2.8 nm, which is even larger than those of CdSe, CdS, and CdTe QDs at similar sizes. Furthermore, both of the 2.2 nm and 2.8 nm-sized InP/ZnS QDs exhibit strong saturable absorption in near resonant regime, which is attributed to large exciton Bohr radius in this material. These results strongly suggest the promising potential of InP/ZnS QDs for widespread applications, especially in two-photon excited bio-imaging and saturable absorbing.
Open Access
De novo ChIP-seq analysis
(BioMed Central Ltd., 2015) He, X.; Cicek, A. E.; Wang, Y.; Schulz, M. H.; Le, Hai-Son; Bar-Joseph, Z.
Methods for the analysis of chromatin immunoprecipitation sequencing (ChIP-seq) data start by aligning the short reads to a reference genome. While often successful, they are not appropriate for cases where a reference genome is not available. Here we develop methods for de novo analysis of ChIP-seq data. Our methods combine de novo assembly with statistical tests enabling motif discovery without the use of a reference genome. We validate the performance of our method using human and mouse data. Analysis of fly data indicates that our method outperforms alignment based methods that utilize closely related species.
Open Access
Reconfigurable Liquid Whispering Gallery Mode Microlasers
(Nature Publishing Group, 2016) Yang, S.; Ta, V. D.; Wang, Y.; Chen, R.; He, T.; Demir, Hilmi Volkan; Sun, H.
Engineering photonic devices from liquid has been emerging as a fascinating research avenue. Reconfigurably tuning liquid optical micro-devices are highly desirable but remain extremely challenging because of the fluidic nature. In this article we demonstrate an all-liquid tunable whispering gallery mode microlaser floating on a liquid surface fabricated by using inkjet print technique. We show that the cavity resonance of such liquid lasers could be reconfigurably manipulated by surface tension alteration originated from the tiny concentration change of the surfactant in the supporting liquid. As such, remarkable sensing of water-soluble organic compounds with a sensitivity of free spectral range as high as 19.85 THz/(mol · mL-1) and the detectivity limit around 5.56 × 10-3 mol · mL-1 is achieved. Our work provides not only a novel approach to effectively tuning a laser resonator but also new insight into potential applications in biological, chemical and environmental sensing.
Open Access
Stable and low ‐ threshold optical gain in CdSe/CdS quantum dots: an all ‐ colloidal frequency up ‐ converted laser
(Wiley-VCH Verlag, 2015) Güzeltürk, B.; Keleşemur, Y.; Güngor, K.; Yeltik, A.; Akgül, M. Z.; Wang, Y.; Chen R.; Dang, C.; Sun, H.; Demir, Hilmi Volkan
An all-solution processed and all-colloidal laser is demonstrated using tailored CdSe/CdS core/shell quantum dots, which exhibit highly stable and low-threshold optical gain owing to substantially suppressed non-radiative Auger recombination.
Open Access
State of the art and prospects for Halide Perovskite nanocrystals
(American Chemical Society, 2021-06-17) Dey, A.; Ye, J.; De, A.; Debroye, E.; Ha, S. K.; Bladt, E.; Kshirsagar, A. S.; Wang, Z.; Yin, J.; Wang, Y.; Quan, L. N.; Yan, F.; Gao, M.; Li, X.; Shamsi, J.; Debnath, T.; Cao, M.; Scheel, M. A.; Kumar, S.; Steele, J. A.; Gerhard, M.; Chouhan, L.; Xu, K.; Wu, X-g; Li, Y.; Zhang, Y.; Han, C.; Dutta, A.; Vincon, I.; Rogach, A. L.; Nag, A.; Samanta, A.; Korgel, B. A.; Shih, C.-J.; Gamelin, D. R.; Son, D. H.; Zeng, H.; Zhong, H.; Sun, H.; Demir, Hilmi Volkan; Scheblykin, I. G.; Mora-Seró, I.; Stolarczyk, J. K.; Zhang, J. Z.; Feldmann, J.; Hofkens, J.; Luther, J. M.; Pérez-Prieto, J.; Li, L.; Manna, L.; Bodnarchuk, M. I.; Kovalenko, M. V.; Roeffaers, M. B. J.; Pradhan, N.; Mohammed, O. F.; Bakr, O. M.; Yang, P.; Müller-Buschbaum, P.; Kamat, P. V.; Bao, Q.; Zhang, Q.; Krahne, R.; Galian, R. E.; Stranks, S. D.; Bals, S.; Biju, V.; Tisdale, W. A.; Yan, Y.; Hoye, R. L. Z.; Polavarapu, L.
Metal-halide perovskites have rapidly emerged as one of the most promising materials of the 21st century, with many exciting properties and great potential for a broad range of applications, from photovoltaics to optoelectronics and photocatalysis. The ease with which metal-halide perovskites can be synthesized in the form of brightly luminescent colloidal nanocrystals, as well as their tunable and intriguing optical and electronic properties, has attracted researchers from different disciplines of science and technology. In the last few years, there has been a significant progress in the shape-controlled synthesis of perovskite nanocrystals and understanding of their properties and applications. In this comprehensive review, researchers having expertise in different fields (chemistry, physics, and device engineering) of metal-halide perovskite nanocrystals have joined together to provide a state of the art overview and future prospects of metal-halide perovskite nanocrystal research.
Open Access
Top executives’ great famine experience and stock price crash risk
(Elsevier Inc., 2021-10-09) Cui, X.; Sun, M.; Şensoy, Ahmet; Wang, P.; Wang, Y.
Using Chinese stock market data, we examine the impact of top executives’ great famine experience on stock price crash risk. We provide insights on the consequences of early-life disaster experience and the underlying mechanisms through which top executives’ famine experience affects crash risk. Evidence shows that, firms led by top executives who experienced the great famine in early-life have lower stock price crash risk. In addition, these firms have higher information transparency and lower information risk, which ultimately reduce the future stock price crash risk. And the effect varies with top executives’ growth stage, firm characteristics, and external monitoring.
Open Access
Ultrafast control of the optical transition in type-II colloidal quantum wells
(American Chemical Society, 2023-04-21) Yu, J.; Durmusoglu, E. G.; Wang, Y.; Sharma, M.; Demir, Hilmi Volkan; Dang, C.
Manipulating the optical transition in semiconductors at ultrashort timescales is of both fundamental interest and central importance for emerging photonic applications. Traditionally, this manipulation is realized by electrostatic gating via Stark effects or band-gap renormalizations. Here, we report an ultrafast and all-optical route to engineer an indirect transition in core–crown colloidal quantum wells (CQWs), namely, CdSe/CdTe, with a type-II band alignment. Following the intense laser pulse excitation, the indirect band transition energy exhibits a pronounced blueshift–redshift crossover on the picosecond timescale, stemming from the formation and dissipation of the transient electric field (E-field) that forms upon photoexcitation to compensate for the driving force provided by the band offsets. Both the energy shift and dynamics of the transient E-field can be modulated optically by tuning the laser pulse excitation fluence. Our finding demonstrates a strong analogy between the type-II heterojunction and a p–n junction with respect to carrier equilibrium processes, which holds promise to facilitate the integration of CQWs within optical switching networks.