Browsing by Author "Gülseren, O."
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Item Open Access Ab initio study of neutral ( TiO2 ) n clusters and their interactions with water and transition metal atoms(IOP Publishing, 2012-07-04) Çakır, D.; Gülseren, O.We have systematically investigated the growth behavior and stability of small stoichiometric (TiO2)n (n = 1–10) clusters as well as their structural, electronic and magnetic properties by using the first-principles plane wave pseudopotential method within density functional theory. In order to find out the ground state geometries, a large number of initial cluster structures for each n has been searched via total energy calculations. Generally, the ground state structures for the case of n = 1–9 clusters have at least one monovalent O atom, which only binds to a single Ti atom. However, the most stable structure of the n = 10 cluster does not have any monovalent O atom. On the other hand, Ti atoms are at least fourfold coordinated for the ground state structures for n ≥ 4 clusters. Our calculations have revealed that clusters prefer to form three-dimensional structures. Furthermore, all these stoichiometric clusters have nonmagnetic ground state. The formation energy and the highest occupied molecular orbital (HOMO)–lowest unoccupied molecular orbital (LUMO) gap for the most stable structure of (TiO2)n clusters for each n have also been calculated. The formation energy and hence the stability increases as the cluster size grows. In addition, the interactions between the ground state structure of the (TiO2)n cluster and a single water molecule have been studied. The binding energy (Eb) of the H2O molecule exhibits an oscillatory behavior with the size of the clusters. A single water molecule preferably binds to the cluster Ti atom through its oxygen atom, resulting an average binding energy of 1.1 eV. We have also reported the interaction of the selected clusters (n = 3, 4, 10) with multiple water molecules. We have found that additional water molecules lead to a decrease in the binding energy of these molecules to the (TiO2)n clusters. Finally, the adsorption of transition metal (TM) atoms (V, Co and Pt) on the n = 10 cluster has been investigated for possible functionalization. All these elements interact strongly with this cluster, and a permanent magnetic moment is induced upon adsorption of Co and V atoms. We have observed gap localized TM states leading to significant HOMO–LUMO gap narrowing, which is essential to achieve visible light response for the efficient use of TiO2 based materials. In this way, electronic and optical as well as magnetic properties of TiO2 materials can be modulated by using the appropriate adsorbate atomsItem Open Access Adsorption of Pt and Bimetallic Pt-Au clusters on the partially reduced rutile (110) TiO2 surface: a first-principles study(American Chemical Society, 2012) Çakır, D.; Gülseren, O.An extensive study of the adsorption of small Ptn (n = 1−8) and bimetallic Pt2Aum (m = 1−5) clusters on the partially reduced rutile (110) TiO2 surface has been nperformed via total energy pseudopotential calculations based on density functional theory. Structures, energetics, and electronic properties of adsorbed Ptn and Pt2Aum clusters have been determined. The surface oxygen vacancy site has been found to be the nucleation center for the growth of Pt clusters. These small Pt clusters strongly interact with the partially reduced surface and prefer to form planar structures for n = 1−6 since the cluster−substrate interaction governs the cluster growth at low Pt coverage. We found a planar-to-threedimensional structural transition at n = 7 for the formation of Ptn clusters on the reduced TiO2 surface. GGA+U calculations have also been performed to get a reasonable description of the reduced oxide surface. We observed significant band gap narrowing upon surface−Ptn cluster interaction which leads to the formation of gap localized Pt states. In the case of bimetallic Pt−Au clusters, Aum clusters have been grown on the Pt2−TiO2 surface. The previously adsorbed Pt dimer at the vacancy site of the reduced surface acts as a clustering center for Au atoms. The presence of the Pt dimer remarkably enhances the binding energy and limits the migration of Au atoms on the titania surface. The charge state of both individual atoms and clusters has been obtained from the Bader charge analysis, and it has been found that charge transfer among the Pt atoms of Ptn clusters and the metal oxide surface is stronger compared to that of Au clusters and the Pt2−TiO2 system.Item Open Access Anatase TiO2 nanowires functionalized by organic sensitizers for solar cells: a screened Coulomb hybrid density functional study(American Institute of Physics Inc., 2015) Ünal, H.; Gunceler, D.; Gülseren, O.; Ellialtıoğlu, S.; Mete, E.The adsorption of two different organic molecules cyanidin glucoside (C21O11H20) and TA-St-CA on anatase (101) and (001) nanowires has been investigated using the standard and the range separated hybrid density functional theory calculations. The electronic structures and optical spectra of resulting dye-nanowire combined systems show distinct features for these types of photochromophores. The lowest unoccupied molecular orbital of the natural dye cyanidin glucoside is located below the conduction band of the semiconductor while, in the case of TA-St-CA, it resonates with the states inside the conduction band. The wide-bandgap anatase nanowires can be functionalized for solar cells through electron-hole generation and subsequent charge injection by these dye sensitizers. The intermolecular charge transfer character of Donor-π-Acceptor type dye TA-St-CA is substantially modified by its adsorption on TiO2 surfaces. Cyanidin glucoside exhibits relatively stronger anchoring on the nanowires through its hydroxyl groups. The atomic structures of dye-nanowire systems re-optimized with the inclusion of nonlinear solvation effects showed that the binding strengths of both dyes remain moderate even in ionic solutions.Item Open Access Characterization of platinum nitride from first-principles calculations(Institute of Physics Publishing, 2009) Yıldız, A.; Akıncı, Ü.; Gülseren, O.; Sökmen, İ.We have performed a systematic study of the ground state properties of the zinc-blende, rock-salt, tetragonal, cuprite, fluorite and pyrite phases of platinum nitride by using the plane wave pseudopotential calculations within the density functional theory. The equilibrium structural parameters and bulk moduli are computed within both the local density approximation (LDA) and generalized gradient approximation (GGA). The comparison of the equation of state (EOS) calculated within the LDA for the pyrite structure with the experimental results demonstrates an excellent agreement, hence the use of the LDA rather than the GGA is essential. Complete sets of elastic moduli are presented for cubic forms. The analysis of the results reveal that the pyrite phase with PtN2 stoichiometry leads to the formation of a hard material with the shear modulus G = 206 GPa. The electronic structure of pyrite PtN2 is given, which shows a narrow indirect gap. The vibrational properties of platinum nitride are investigated in detail from lattice dynamical calculations. The calculations show that fluorite and pyrite structures are dynamically stable as well. However, the calculated vibrational modes of pyrite PtN2 do not show complete agreement with experimental Raman frequencies.Item Open Access A comparative study of O2 adsorbed carbon nanotubes(2003) Dag, S.; Gülseren, O.; Çıracı, SalimFirst-principles, density functional calculations show that O2 adsorbed single-wall carbon nanotubes (SWNT) show dramatic differences depending on the type of the tube. Upon O2 physisorption, the zig-zag SWNT remains semiconducting, while the metallicity of the armchair is lifted for the spin-down bands. The spin-up bands continue to cross at the Fermi level, and make the system metallic only for one type of spin. The singlet bound state of O2 occurs at the bridge site of the (6,6) SWNT at small distance from the surface of the tube. However, for the hollow site, the molecule dissociates when it comes close to the surface. © 2003 Elsevier B.V. All rights reserved.Item Open Access DFT explorations of quadrupole coupling constants for planar 5-fluorouracil pairs(Elsevier, 2016-08) Mirzaei, M.; Gülseren, O.; Hadipour, N.Atomic scale properties of quadrupole coupling constants (CQ) have been evaluated for singular and paired 5-fluorouracil (FU) models. Structural possibilities and properties for various types of hydrogen bonded (HB) homo pairs of FU have been investigated based on density functional theory (DFT) calculations. The models have been optimized to obtain the minimum energy level structures and only the planar molecular pairs have been considered. Various types of HB interactions have also managed the molecular shapes for the FU pairs. Different types of energies and also electron transferring properties have been investigated by the evaluated optimized properties. The atomic scale results indicated different strengths of HB interactions for FU pairs according to the changes of CQ properties for atoms in the singular and paired systems depending on the strength of interactions.Item Open Access DFT studies of graphene-functionalised derivatives of capecitabine(Walter de Gruyter GmbH, 2017-10) Aramideh, M.; Mirzaei, M.; Khodarahmi, G.; Gülseren, O.Cancer is one of the major problems for so many people around the world; therefore, dedicating efforts to explore efficient therapeutic methodologies is very important for researchers of life sciences. In this case, nanostructures are expected to be carriers of medicinal compounds for targeted drug design and delivery purposes. Within this work, the graphene (Gr)-functionalised derivatives of capecitabine (CAP), as a representative anticancer, have been studied based on density functional theory calculations. Two different sizes of Gr molecular models have been used for the functionalisation of CAP counterparts, CAP-Gr3 and CAP-Gr5, to explore the effects of Gr-functionalisation on the original properties of CAP. All singular and functionalised molecular models have been optimised and the molecular and atomic scale properties have been evaluated for the optimised structures. Higher formation favourability has been obtained for CAP-Gr5 in comparison with CAP-Gr3 and better structural stability has been obtained in the water-solvated system than the isolated gas-phase system for all models. The CAP-Gr5 model could play a better role of electron transferring in comparison with the CAP-Gr3 model. As a concluding remark, the molecular properties of CAP changed from singular to functionalised models whereas the atomic properties remained almost unchanged, which is expected for a carrier not to use significant perturbations to the original properties of the carried counterpart.Item Open Access DFT study of noble metal impurities of TiO2 ( 110 )(Springer Verlag, 2012-06) Mete, E.; Gülseren, O.; Ellialtıoğlu, Ş.Atomic and electronic structures of TiO2(110) surface with possible adsorptional, substitutional and interstitial Au or Pt elemental impurities at full and one-sixth monolayer concentrations were investigated by density functional theory calculations using the projector augmented wave approach within the plane wave method. Relative thermodynamic stabilities of such phases have been discussed by means of their surface free energies. Our results suggest that tunable photocatalytic activity can be achieved on Pt atom admixed rutile (110) surface at low coverages.Item Open Access Dipeptide adsorption on Si (100)-2x1 asymmetric surface by first principles(World Scientific Publishing Co. Pte. Ltd, 2010) Aktürk, E.; Gülseren, O.; Arkin, H.; Çelik, T.The adsorption of alanine dipeptide on a Si(100)-2 × 1 asymmetric surface is studied by using pseudopotential plane wave approach based on Density Functional Theory (DFT). Adsorption energies for different surface sites of various conformations are calculated and the groove site is found to be energetically most favorable. We observed that the molecule-surface interactions might modify surface reconstruction: asymmetric surface dimers reconstruct to asymmetric dimers in opposite directions doubling the surface periodicity, which in turn gives the surface metallic properties.Item Open Access Dye adsorbates BrPDI, BrGly, and BrAsp on anatase TiO2 (001) for dye-sensitized solar cell applications(American Physical Society, 2009) Çakır, D.; Gülseren, O.; Mete, E.; Ellialtıoǧlu, Ş.Using the first-principles plane-wave pseudopotential method within density functional theory, we systematically investigated the interaction of perylenediimide PDI-based dye compounds BrPDI, BrGly, and BrAsp with both unreconstructed UR and reconstructed RC anatase TiO2 001 surfaces. All dye molecules form strong chemical bonds with surface in the most favorable adsorption structures. In UR-BrGly, RC-BrGly, and RC-BrAsp cases, we have observed that highest occupied molecular orbital and lowest unoccupied molecular orbital levels of molecules appear within band gap and conduction-band region, respectively. Moreover, we have obtained a gap narrowing upon adsorption of BrPDI on the RC surface. Because of the reduction in effective band gap of surface-dye system and possibly achieving the visible-light activity, these results are valuable for photovoltaic and photocatalytic applications. We have also considered the effects of hydration of surface to the binding of BrPDI. It has been found that the binding energy drops significantly for the completely hydrated surfaces.Item Open Access Effect of impurities on the mechanical and electronic properties of Au, Ag, and Cu monatomic chain nanowires(American Physical Society, 2011) Çakır, D.; Gülseren, O.In this study, we have investigated the interaction of various different atomic and molecular species (H, C, O, H 2, and O 2) with the monatomic chains of Au, Ag, and Cu via total-energy calculations using the plane-wave pseudopotential method based on density functional theory. The stability, energetics, mechanical, and electronic properties of the clean and contaminated Au, Ag, and Cu nanowires have been presented. We have observed that the interaction of H, C, or O atoms with the monatomic chains are much stronger than the one of H 2 or O 2 molecules. The atomic impurities can easily be incorporated into these nanowires; they form stable and strong bonds with these one-dimensional structures when they are inserted in or placed close to the nanowires. Moreover, the metal-atomic impurity bond is much stronger than the metal-metal bond. Upon elongation, the nanowires contaminated with atomic impurities usually break from the remote metal-metal bond. We have observed both metallic and semiconducting contaminated nanowires depending on the type of impurity, whereas all clean monatomic chains of Au, Cu, and Ag exhibit metallic behavior. Our findings indicate that the stability and the electronic properties of these monatomic chains can be tuned by using appropriate molecular or atomic additives. © 2011 American Physical Society.Item Open Access Effects of hydrogen adsorption on single-wall carbon nanotubes: metallic hydrogen decoration(American Physical Society, 2002) Gülseren, O.; Yildirim, T.; Çıracı, SalimWe show that the electronic and atomic structure of carbon nanotubes undergo dramatic changes with hydrogen chemisorption from first principle calculations. Upon uniform exohydrogenation at half coverage, the cross sections of zigzag nanotubes become literally square or rectangular, and they are metallic with very high density of states at the Fermi level, while other isomers can be insulating. For both zigzag and armchair nanotubes, hydrogenation of each carbon atom from inside and outside alternatively yield the most stable isomer with a very weak curvature dependence and a large band gap.Item Open Access Electric-field effects on finite-length superlattices(1992) Gülseren, O.; Çıracı, SalimIn this paper, we study the Wannier-Stark ladder by carrying out numerical calculations on a multiple-quantum-well structure under an applied electric field. The variation in the Wannier-Stark-ladder energies and the degree of localization of the corresponding wave function are examined over a wide range of values of the applied electric field. Our results show that the Wannier-Stark ladder does exist for a finite, but periodic system that consists of a large number of quantum wells having a multiple-miniband structure. © 1992 The American Physical Society.Item Open Access Electronic structure of half-metallic ferromagnet Co2MnSi at high-pressure(Springer New York LLC, 2010) Gökoǧlu, G.; Gülseren, O.In this study, first principles calculation results of the half-metallic ferromagnetic Heusler compound Co2MnSi are presented. All calculations are based on the spin-polarized generalized gradient approximation (σ-GGA) of the density functional theory and ultrasoft pseudopotentials with plane wave basis. Electronic structure of related compound in cubic L21 structure is investigated up to 95 GPa uniform hydrostatic pressure. The half-metal to metal transition was observed around ∼70 GPa together with downward shift of the conduction band minimum (CBM) and a linear increase of direct band gap of minority spins at Γ-point with increasing pressure. The electronic density of states of minority spins at Fermi level, which are mainly due to the cobalt atoms, become remarkable with increasing pressure resulting a sharp decrease in spin polarization ratio. It can be stated that the pressure affects minority spin states rather than that of majority spins and lead to a slight reconstruction of minority spin states which lie below the Fermi level. In particular, energy band gap of minority spin states in equilibrium structure is obviously not destroyed, but the Fermi level is shifted outside the gap.Item Open Access Electronic structure of strained Sin / Gen (001) superlattices(Pergamon Press, 1988) Çıracı, Salim; Gülseren, O.; Ellialtioğlu, Ş.Using the empirical tight binding method we have investigated the electronic properties of the Sin/Gen(001) strained superlattices as a function of the superlattice periodicity and the band misfit. For n ≥ 4 we have found that first and second conduction band states are localized in Si. The hole states localized in Ge appear for n ≥ 4. The difference between the direct and indirect band gaps is reduced from 2.01 eV for bulk Si to 0.01 eV for n=6 which can be considered to be quasi-direct. For the cases n=6 and n=8, the band gap might become direct for large values of band misfit. © 1988.Item Open Access Electronic structure of the contact between carbon nanotube and metal electrodes(American Institute of Physics, 2003) Dag, S.; Gülseren, O.; Çıracı, Salim; Yildirim, T.Our first-principles study of the contact between a semiconducting single-walled carbon nanotube ~s-SWNT! and metal electrodes shows that the electronic structure and potential depend strongly on the type of metal. The s-SWNT is weakly side-bonded to the gold surface with minute charge rearrangement and remains semiconducting. A finite potential barrier forms at the contact region. In contrast, the molybdenum surface forms strong bonds, resulting in significant charge transfer and metallicity at the contact. The radial deformation of the tube lowers the potential barrier at the contact and increases the state density at the Fermi level.Item Open Access Electronic structures and optical spectra of thin anatase TiO2 nanowires through hybrid density functional and quasiparticle calculations(American Physical Society, 2014) Ünal, H.; Gülseren, O.; Ellialtıoğlu, Ş.; Mete, E.The electronic properties of quasi-one-dimensional anatase TiO2 nanostructures, in the form of thin nanowires having (101) and (001) facets, have been systematically investigated using the standard, hybrid density functional and quasiparticle calculations. Their visible photoabsorption characteristics have also been studied at these levels of theories. The thin stoichiometric nanowire models are predicted to have larger band gaps relative to their bulk values. The band-gap-related features appear to be better described with the screened Coulomb hybrid density functional method compared to the standard exchange-correlation schemes. Depending on the self-consistency in the perturbative GW methods, even larger energy corrections have been obtained for the band gaps of both (101) and (001) titanium dioxide nanowires. © 2014 American Physical Society.Item Open Access Energetics and Electronic Structures of Individual Atoms Adsorbed on Carbon Nanotubes(American Chemical Society, 2004) Durgun, Engin; Dag, S.; Çıracı, Salim; Gülseren, O.The adsorption of individual atoms on the semiconducting and metallic single-walled carbon nanotubes (SWNT) has been investigated by using the first principles pseudopotential plane wave method within density functional theory. The stable adsorption geometries and binding energies have been determined for a large number of foreign atoms ranging from alkali and simple metals to the transition metals and group IV elements. We have found that the character of the bonding and associated physical properties strongly depends on the type of adsorbed atoms, in particular, on their valence electron structure. Our results indicate that the properties of SWNTs can be modified by the adsorbed foreign atoms. Although the atoms of good conducting metals, such as Zn, Cu, Ag, and Au, form very weak bonds, transition-metal atoms such as Ti, Sc, Nb, and Ta and group IV elements C and Si are adsorbed with a relatively high binding energy. Owing to the curvature effect, these binding energies are larger than the binding energies of the same atoms on the graphite surface. We have showed that the adatom carbon can form strong and directional bonds between two SWNTs. These connects can be used to produce nanotube networks or grids. Most of the adsorbed transition-metal atoms excluding Ni, Pd, and Pt have a magnetic ground state with a significant magnetic moment. Our results suggest that carbon nanotubes can be functionalized in different ways by their coverage with different atoms, showing interesting applications such as ID nanomagnets or nanoconductors, conducting connects, and so forth.Item Open Access Exohydrogenated single-wall carbon nanotubes(American Physical Society, 2001) Yildirim, T.; Gülseren, O.; Çıracı, SalimAn extensive first-principles study of fully exohydrogenated zigzag (n,0) and armchair (n,n) single-wall carbon nanotubes (CnHn), polyhedral molecules including cubane, dodecahedrane, and C60H60 points to crucial differences in the electronic and atomic structures relevant to hydrogen storage and device applications. CnHn’s are estimated to be stable up to the radius of a ~8,8! nanotube, with binding energies proportional to 1/R. Attaching a single hydrogen to any nanotube is always exothermic. Hydrogenation of zigzag nanotubes is found to be more likely than armchair nanotubes with similar radius. Our findings may have important implications for selective functionalization and finding a way of separating similar radius nanotubes from each other.Item Open Access First principles study of electronic and mechanical properties of molybdenum selenide type nanowires(American Physical Society, 2006) Çakir, D.; Durgun, Engin; Gülseren, O.; Çıracı, SalimUsing the first-principles plane-wave pseudopotential method within density functional theory, we have systematically investigated structural, electronic, and mechanical properties of M2 Y6 X6, Y6 X6 (X=Se,Te,S; Y=Mo,Cr,W; and M=Li,Na) nanowires and bulk phase of M2 Y6 X6. We found that not only Mo6 X6, but also transition metal and chalcogen atoms lying in the same columns of Mo and Se can form stable nanowires consisting of staggered triangles of Y3 X3. We have shown that all wires have nonmagnetic ground states in their equilibrium geometry. Furthermore, these structures can be either a metal or semiconductor depending on the type of chalcogen element. All Y6 X6 wires with X=Te atom are semiconductors. Mechanical stability, elastic stiffness constants, breaking point, and breaking force of these wires have been calculated in order to investigate the strength of these wires. Ab initio molecular dynamic simulations performed at 500 K suggest that overall structure remains unchanged at high temperature. Adsorption of H, O, and transition metal atoms like Cr and Ti on Mo6 Se6 have been investigated for possible functionalization. All these elements interact with Mo6 Se6 wire forming strong chemisorption bonds, and a permanent magnetic moment is induced upon the adsorption of Cr or Ti atoms. Molybdenum selenide-type nanowires can be alternative for carbon nanotubes, since the crystalline ropes consisting of one type of (M2) Y6 X6 structures can be decomposed into individual nanowires by using solvents, and an individual nanowire by itself is either a metal or semiconductor and can be functionalized.
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