A constrained, force-directed layout algorithm for biological pathways

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dc.citation.epage319en_US
dc.citation.spage314en_US
dc.contributor.authorGenç, Burkayen_US
dc.contributor.authorDoğrusöz, Uğuren_US
dc.coverage.spatialPerugia, Italyen_US
dc.date.accessioned2019-01-31T12:38:21Z
dc.date.available2019-01-31T12:38:21Zen_US
dc.date.issued2004-09en_US
dc.departmentDepartment of Computer Engineeringen_US
dc.departmentBilkent Center for Bioinformatics (BCBI)
dc.descriptionConference name: 11th International Symposium on Graph Drawing, GD 2003en_US
dc.descriptionDate of Conference: 21-24 September 2003en_US
dc.description.abstractWe present a new elegant algorithm for layout of biological signaling pathways. It uses a force-directed layout scheme, taking into account directional and regional constraints enforced by different molecular interaction types and subcellular locations in a cell. The algorithm has been successfully implemented as part of a pathway integration and analysis toolkit named PATIKA and results with respect to computational complexity and quality of the layout have been found satisfactory.en_US
dc.description.provenanceSubmitted by Ülkü Ögel (ulkul@bilkent.edu.tr) on 2019-01-31T12:38:21Z No. of bitstreams: 1 A_constrained_force_directed_layout_algorithm_for_biological_pathways.pdf: 266315 bytes, checksum: 308ad6f190907055839ba5c58c844033 (MD5)en_US
dc.description.provenanceMade available in DSpace on 2019-01-31T12:38:21Z (GMT). No. of bitstreams: 1 A_constrained_force_directed_layout_algorithm_for_biological_pathways.pdf: 266315 bytes, checksum: 308ad6f190907055839ba5c58c844033 (MD5) Previous issue date: 2004en_US
dc.identifier.doi10.1007/978-3-540-24595-7_29en_US
dc.identifier.doi10.1007/b94919en_US
dc.identifier.urihttp://hdl.handle.net/11693/48613en_US
dc.language.isoEnglishen_US
dc.publisherSpringer, Berlin, Heidelbergen_US
dc.relation.isversionofhttps://doi.org/10.1007/978-3-540-24595-7_29en_US
dc.relation.isversionofhttps://doi.org/10.1007/b94919en_US
dc.source.titleGraph Drawing - 11th International Symposium, GD 2003en_US
dc.subjectSpring forceen_US
dc.subjectRepulsion forceen_US
dc.subjectLayout algorithmen_US
dc.subjectForce versusen_US
dc.subjectPathway integrationen_US
dc.titleA constrained, force-directed layout algorithm for biological pathwaysen_US
dc.typeConference Paperen_US

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