Design and evaluation of an ontology based information extraction system for radiological reports

Date
2010
Authors
Soysal, E.
Cicekli, I.
Baykal, N.
Advisor
Instructor
Source Title
Computers in Biology and Medicine: an international journal
Print ISSN
0010-4825
Electronic ISSN
Publisher
Pergamon Press
Volume
40
Issue
11-12
Pages
900 - 911
Language
English
Type
Article
Journal Title
Journal ISSN
Volume Title
Abstract

This paper describes an information extraction system that extracts and converts the available information in free text Turkish radiology reports into a structured information model using manually created extraction rules and domain ontology. The ontology provides flexibility in the design of extraction rules, and determines the information model for the extracted semantic information. Although our information extraction system mainly concentrates on abdominal radiology reports, the system can be used in another field of medicine by adapting its ontology and extraction rule set. We achieved very high precision and recall results during the evaluation of the developed system with unseen radiology reports. © 2010 Elsevier Ltd.

Course
Other identifiers
Book Title
Keywords
Information extraction, Medical language processing, Natural language processing, Ontology, Turkish radiology reports
Citation