Fast system calibration with coded calibration scenes for magnetic particle imaging
buir.contributor.author | İlbey, Serhat | |
buir.contributor.author | Güngör, Alper | |
buir.contributor.author | Çukur, Tolga | |
buir.contributor.author | Sarıtaş, Emine Ülkü | |
buir.contributor.author | Güven, H. Emre | |
dc.citation.epage | 2080 | en_US |
dc.citation.issueNumber | 9 | en_US |
dc.citation.spage | 2070 | en_US |
dc.citation.volumeNumber | 38 | en_US |
dc.contributor.author | İlbey, Serhat | |
dc.contributor.author | Top, C. B. | |
dc.contributor.author | Güngör, Alper | |
dc.contributor.author | Çukur, Tolga | |
dc.contributor.author | Sarıtaş, Emine Ülkü | |
dc.contributor.author | Güven, H. Emre | |
dc.date.accessioned | 2021-03-10T07:07:58Z | |
dc.date.available | 2021-03-10T07:07:58Z | |
dc.date.issued | 2019 | |
dc.department | Aysel Sabuncu Brain Research Center (BAM) | en_US |
dc.department | Department of Electrical and Electronics Engineering | en_US |
dc.department | Interdisciplinary Program in Neuroscience (NEUROSCIENCE) | en_US |
dc.department | National Magnetic Resonance Research Center (UMRAM) | en_US |
dc.description.abstract | Magnetic particle imaging (MPI) is a relatively new medical imaging modality, which detects the nonlinear response of magnetic nanoparticles (MNPs) that are exposed to external magnetic fields. The system matrix (SM) method for MPI image reconstruction requires a time consuming system calibration scan prior to image acquisition, where a single MNP sample is measured at each voxel position in the field-of-view (FOV). The scanned sample has the maximum size of a voxel so that the calibration measurements have relatively poor signal-to-noise ratio (SNR). In this paper, we present the coded calibration scene (CCS) framework, where we place multiple MNP samples inside the FOV in a random or pseudo-random fashion. Taking advantage of the sparsity of the SM, we reconstruct the SM by solving a convex optimization problem with alternating direction method of multipliers using CCS measurements. We analyze the effects of filling rate, number of measurements, and SNR on the SM reconstruction using simulations and demonstrate different implementations of CCS for practical realization. We also compare the imaging performance of the proposed framework with that of a standard compressed sensing SM reconstruction that utilizes a subset of calibration measurements from a single MNP sample. The results show that CCS significantly reduces calibration time while increasing both the SM reconstruction and image reconstruction performances. | en_US |
dc.description.provenance | Submitted by Onur Emek (onur.emek@bilkent.edu.tr) on 2021-03-10T07:07:58Z No. of bitstreams: 1 Fast_System_Calibration_With_Coded_Calibration_Scenes_for_Magnetic_Particle_Imaging.pdf: 3177733 bytes, checksum: 3570b580139bb57b52c039ac0be074c8 (MD5) | en |
dc.description.provenance | Made available in DSpace on 2021-03-10T07:07:58Z (GMT). No. of bitstreams: 1 Fast_System_Calibration_With_Coded_Calibration_Scenes_for_Magnetic_Particle_Imaging.pdf: 3177733 bytes, checksum: 3570b580139bb57b52c039ac0be074c8 (MD5) Previous issue date: 2019 | en |
dc.description.sponsorship | This work was supported by the Scientific and Technological Research Council of Turkey (TUBITAK) under Grant 9050103 and Grant 115E677. The work of E. U. Saritas and T. Çukur was supported in part by the Turkish Academy of Sciences through the TUBA-GEBIP 2015 Program, in part by the BAGEP Award of the Science Academy, and in part by the European Molecular Biology Organization through an Installation Grant 3028. | en_US |
dc.identifier.doi | 10.1109/TMI.2019.2896289 | en_US |
dc.identifier.issn | 0278-0062 | |
dc.identifier.uri | http://hdl.handle.net/11693/75906 | |
dc.language.iso | English | en_US |
dc.publisher | IEEE | en_US |
dc.relation.isversionof | https://dx.doi.org/10.1109/TMI.2019.2896289 | en_US |
dc.source.title | IEEE Transactions on Medical Imaging | en_US |
dc.subject | Magnetic particle imaging | en_US |
dc.subject | System matrix | en_US |
dc.subject | Compressed sensing | en_US |
dc.subject | Alternating direction method of multipliers | en_US |
dc.subject | Coded calibration scenes | en_US |
dc.subject | Calibration | en_US |
dc.title | Fast system calibration with coded calibration scenes for magnetic particle imaging | en_US |
dc.type | Article | en_US |
Files
Original bundle
1 - 1 of 1
Loading...
- Name:
- Fast_System_Calibration_With_Coded_Calibration_Scenes_for_Magnetic_Particle_Imaging.pdf
- Size:
- 3.03 MB
- Format:
- Adobe Portable Document Format
- Description:
License bundle
1 - 1 of 1
No Thumbnail Available
- Name:
- license.txt
- Size:
- 1.71 KB
- Format:
- Item-specific license agreed upon to submission
- Description: