Characterization of secretion signals within the novel carboxy-terminal domain of mutant calreticulin in myeloproliferative neoplasms

buir.advisorChachoua, Ilyas
dc.contributor.authorPuka, Beana
dc.date.accessioned2025-08-27T10:47:21Z
dc.date.available2025-08-27T10:47:21Z
dc.date.issued2025-08
dc.date.submitted2025-08-22
dc.descriptionCataloged from PDF version of article.
dc.descriptionIncludes bibliographical references (leaves 73-82).
dc.description.abstractMyeloproliferative neoplasms (MPNs) are clonal hematopoietic disorders marked by excessive production of mature myeloid cells. In a subset of patients, mutations in calreticulin (CALR) drive the disease by constitutive activation of the JAK/STAT pathway. All CALR mutations result in a +1 frameshift that generates a novel carboxy- terminal sequence enriched in basic residues and lacking the KDEL ER-retention signal. While CALR normally resides in the endoplasmic reticulum as a multifunctional chaperone, in MPNs mutant CALR is aberrantly secreted, however the precise mechanism underlying this process remains not fully understood. In this study, we aimed to investigate the secretion mechanism of CALR mutant to better understand its role in MPN development. To this end, we employed both in silico and wet lab analysis such as ELM and CELLO prediction tools, site directed mutagenesis and Western blotting techniques. Contrary to the current understanding suggesting that CALR mutant secretion is mainly caused by the loss of the KDEL retention signal, our results indicate that the secretion is largely driven by the newly generated motifs rich in arginine residues. Furthermore, prediction scores suggest that these motifs may also direct the mutant protein to other subcellular compartments, particularly the nucleus. Understanding this mechanism is crucial, as it highlights specific motifs as potential therapeutic targets that could be exploited to develop treatments for CALR-mutant MPN patients.
dc.description.statementofresponsibilityby Beana Puka
dc.embargo.release2026-02-22
dc.format.extentxiv, 84 leaves : illustrations, charts ; 30 cm.
dc.identifier.itemidB163188
dc.identifier.urihttps://hdl.handle.net/11693/117457
dc.language.isoEnglish
dc.subjectMPNs
dc.subjectCALR
dc.subjectJAK/STAT pathway
dc.subjectFrameshift mutations
dc.subjectSecretion signals
dc.subjectArginine
dc.titleCharacterization of secretion signals within the novel carboxy-terminal domain of mutant calreticulin in myeloproliferative neoplasms
dc.title.alternativeMiyeloproliferatif neoplazmlarda mutant kalretikülinin yeni karboksi-terminal alanındaki salgılama sinyallerinin karakterizasyonu
dc.typeThesis
thesis.degree.disciplineMolecular Biology and Genetics
thesis.degree.grantorBilkent University
thesis.degree.levelMaster's
thesis.degree.nameMS (Master of Science)

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