A framework for management of multiple views of cellular pathway graphs

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buir.advisorDoğrusöz, Uğur
dc.contributor.authorGüleşir, Gürcan
dc.date.accessioned2016-07-01T10:59:03Z
dc.date.available2016-07-01T10:59:03Z
dc.date.issued2003
dc.departmentDepartment of Computer Engineeringen_US
dc.descriptionCataloged from PDF version of article.en_US
dc.description.abstractThe enhancements in genomic studies have given birth to the necessity of advanced techniques for storing, integrating and analyzing the accumulated data regarding molecular level cellular processes. Since this data is huge and complex, advanced visualization and complexity management techniques need to be developed to improve its understandability. In this thesis, we present a single subject - multiple view framework for manipulating complex pathway data, which is in the form of a directed graph. The framework facilitates visualization of potentially huge pathway data in possibly varying forms and sizes. While maintaining the subject data (i.e., pathway graph) and its views, the presented framework coordinates all the views using an observer software pattern. It ensures the validity and consistency of subject data across all views. Support for replication of biological data, which is desired to reduce complexity (i.e., high degree ubique pathway objects), is another benefit of our framework. Being a neatly modularized, isolated component of a functional pathway editor, this framework is distinguished from any other single subject - multiple view graph editing environment by addressing the domain specific needs of pathway informatics.en_US
dc.description.degreeM.S.en_US
dc.description.provenanceMade available in DSpace on 2016-07-01T10:59:03Z (GMT). No. of bitstreams: 1 0002404.pdf: 3760687 bytes, checksum: 62312152947d8e21793c65f1157b7eb4 (MD5) Previous issue date: 2003en
dc.description.statementofresponsibilityGüleşir, Gürcanen_US
dc.format.extentxi, 48 leaves, illustrations, 30 cmen_US
dc.identifier.itemidBILKUTUPB072143
dc.identifier.urihttp://hdl.handle.net/11693/29398
dc.language.isoEnglishen_US
dc.publisherBilkent Universityen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectBioinformaticsen_US
dc.subjectview coordinationen_US
dc.subjectmultiple viewsen_US
dc.subjectgraph visualizationen_US
dc.subjectcellular pathwaysen_US
dc.subjectsoftware engineeringen_US
dc.subject.lccQH323.5 .G85 2003en_US
dc.subject.lcshBioinformatics.en_US
dc.titleA framework for management of multiple views of cellular pathway graphsen_US
dc.typeThesisen_US

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