Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps

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buir.contributor.authorBalcı, Hasan
buir.contributor.authorSiper, Metin Can
buir.contributor.authorSaleh, Nasim
buir.contributor.authorSafarli, İlkin
buir.contributor.authorKılıçarslan, Merve
buir.contributor.authorÖzaydın, Rümeysa
buir.contributor.authorDoğrusöz, Uğur
buir.contributor.orcidBalcı, Hasan|0000-0001-8319-7758
buir.contributor.orcidSiper, Metin Can|0000-0002-7556-093X
buir.contributor.orcidSafarli, İlkin|0000-0002-5865-2154
buir.contributor.orcidDoğrusöz, Uğur|0000-0002-7153-0784
dc.citation.epage1477en_US
dc.citation.issueNumber10en_US
dc.citation.spage1475en_US
dc.citation.volumeNumber37en_US
dc.contributor.authorBalcı, Hasan
dc.contributor.authorSiper, Metin Can
dc.contributor.authorSaleh, Nasim
dc.contributor.authorSafarli, İlkin
dc.contributor.authorRoy, L.
dc.contributor.authorKılıçarslan, Merve
dc.contributor.authorÖzaydın, Rümeysa
dc.contributor.authorMazein, A.
dc.contributor.authorAuffray, C.
dc.contributor.authorBabur, Ö.
dc.contributor.authorDemir, E.
dc.contributor.authorDoğrusöz, Uğur
dc.date.accessioned2022-02-10T12:32:31Z
dc.date.available2022-02-10T12:32:31Z
dc.date.issued2021-05-15
dc.departmentDepartment of Computer Engineeringen_US
dc.description.abstractMotivation Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF. Availability and implementation Newt’s source code is publicly available on GitHub and freely distributed under the GNU LGPL. Ample documentation on Newt can be found on http://newteditor.org and on YouTube.en_US
dc.description.provenanceSubmitted by Burcu Böke (tburcu@bilkent.edu.tr) on 2022-02-10T12:32:31Z No. of bitstreams: 1 Newt_a_comprehensive_web-based_tool_for_viewing_constructing_and_analyzing_biological_maps.pdf: 256781 bytes, checksum: af378ee0c381ffeed04db8bab29593e8 (MD5)en
dc.description.provenanceMade available in DSpace on 2022-02-10T12:32:31Z (GMT). No. of bitstreams: 1 Newt_a_comprehensive_web-based_tool_for_viewing_constructing_and_analyzing_biological_maps.pdf: 256781 bytes, checksum: af378ee0c381ffeed04db8bab29593e8 (MD5) Previous issue date: 2021-05-15en
dc.identifier.doi10.1093/bioinformatics/btaa850en_US
dc.identifier.eissn1367-4811
dc.identifier.issn1367-4803
dc.identifier.urihttp://hdl.handle.net/11693/77236
dc.language.isoEnglishen_US
dc.publisherOxford University Pressen_US
dc.relation.isversionofhttps://doi.org/10.1093/bioinformatics/btaa850en_US
dc.source.titleBioinformaticsen_US
dc.titleNewt: a comprehensive web-based tool for viewing, constructing and analyzing biological mapsen_US
dc.typeArticleen_US

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