Zebrafish as an in vivo model of drug screens for liver cancer: the role of phenothiazines
| buir.advisor | Karakayalı, Özlen Konu | |
| dc.contributor.author | Korkmaz, Büşra | |
| dc.date.accessioned | 2021-09-24T10:53:57Z | |
| dc.date.available | 2021-09-24T10:53:57Z | |
| dc.date.copyright | 2021-08 | |
| dc.date.issued | 2021-08 | |
| dc.date.submitted | 2021-09-23 | |
| dc.department | Department of Molecular Biology and Genetics | en_US |
| dc.description | Cataloged from PDF version of article. | en_US |
| dc.description | Thesis (Master's): Bilkent University, Department of Molecular Biology and Genetics, İhsan Doğramacı Bilkent University, 2021. | en_US |
| dc.description | Includes bibliographical references (leaves 103-113). | en_US |
| dc.description.abstract | Hepatocellular carcinoma (HCC) is one of the most dangerous cancer types and sorafenib (SFB) is a commonly used drug against HCC, being the only FDA-approved medication until 2018. However, its limited efficacy and severe side effects emphasize the importance of developing alternative approaches. Regulation of cholesterol has been implicated in the progression of various cancers including HCC. Phenothiazines, which are in use as antipsychotic drugs and with effects on cholesterol biosynthesis, have drawn recent attention as anti-cancer drugs against different cancers. The elucidation of how phenothiazines exert their effects at cellular level might pave the way for proposing better strategies for HCC treatment. Zebrafish serves as a good cancer model for in vivo validations, since it enables efficient tumor formation and tracking. Its conserved genes and similar organ system to human make it even better of a model to reveal both molecular and morphological alterations caused by drugs. Based on previous cell viability studies from our lab, the combination of trifluoperazine (TFP) with SFB was found to exhibit synergism in Hep3B cells, while it was antagonistic in SkHep1 cells. Moreover, RNA-seq analysis on Hep3B cells has demonstrated that steroid biosynthesis and cholesterol metabolism was among the modulated pathways. Therefore, in the present thesis, the regulation of cholesterol levels in response to phenothiazine derivatives was investigated in HCC cell lines SkHep1 and Hep3B. The combinatorial approach was examined on Huh7 cells in terms of the expression of cholesterol biosynthesis genes based on RT-qPCR. After showing the ability of phenothiazine derivatives and TFP-SFB combinations to modulate cellular cholesterol, zebrafish drug screens were performed to determine applicable derivative and combination doses. Assessment of safe doses for TFP, SFB and their combination directed us for xenograft studies, which resulted in enhanced Hep3B cell survival by the combination of low dose (6 μM) TFP and 1 μM of SFB. This finding was further validated based on Alu-based DNA quantifiation, a powerful method we have established. With the help of RNA-seq analysis results, orthologous zebrafish genes, involved in cholesterol biosynthesis were identified and used in cross-species testing. The impact of TFP on liver vasculature was evaluated using transgenic (Fli1a:EGFP) zebrafish and found insignificant. Overall, the findings presented in this thesis highlight that TFP alone or in combination was able to change cellular cholesterol levels and tumor growth. | en_US |
| dc.description.degree | M.S. | en_US |
| dc.description.statementofresponsibility | by Büşra Korkmaz | en_US |
| dc.embargo.release | 2022-03-23 | |
| dc.format.extent | xx, 121 leaves : illustrations, charts, graphics ; 30 cm. | en_US |
| dc.identifier.itemid | B134486 | |
| dc.identifier.uri | http://hdl.handle.net/11693/76545 | |
| dc.language.iso | English | en_US |
| dc.publisher | Bilkent University | en_US |
| dc.rights | info:eu-repo/semantics/openAccess | en_US |
| dc.subject | Hepatocellular carcinoma | en_US |
| dc.subject | Phenothiazines | en_US |
| dc.subject | Sorafenib | en_US |
| dc.subject | Drug repurposing | en_US |
| dc.subject | Cholesterol | en_US |
| dc.subject | Zebrafish | en_US |
| dc.subject | In vivo drug screening | en_US |
| dc.subject | Xenograft | en_US |
| dc.title | Zebrafish as an in vivo model of drug screens for liver cancer: the role of phenothiazines | en_US |
| dc.title.alternative | Karaciğer kanserinde ilaç taramalari için in vivo model olarak zebra baliğinin incelenmesi: fenotiyazinlerin rolü | en_US |
| dc.type | Thesis | en_US |