ChiBE: interactive visualization and manipulation of BioPAX pathway models

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buir.contributor.authorBabur, Özgün
buir.contributor.authorDoğrusöz, Uğur
buir.contributor.authorDemir, Emek
dc.citation.epage431en_US
dc.citation.issueNumber3en_US
dc.citation.spage429en_US
dc.citation.volumeNumber26en_US
dc.contributor.authorBabur, Özgünen_US
dc.contributor.authorDoğrusöz, Uğuren_US
dc.contributor.authorDemir, Emeken_US
dc.contributor.authorSander, C.en_US
dc.date.accessioned2016-02-08T10:00:11Z
dc.date.available2016-02-08T10:00:11Z
dc.date.issued2010-02-01en_US
dc.departmentDepartment of Computer Engineeringen_US
dc.departmentBilkent Center for Bioinformatics (BCBI)
dc.description.abstractSUMMARY: Representing models of cellular processes or pathways in a graphically rich form facilitates interpretation of biological observations and generation of new hypotheses. Solving biological problems using large pathway datasets requires software that can combine data mapping, querying and visualization as well as providing access to diverse data resources on the Internet. ChiBE is an open source software application that features user-friendly multi-view display, navigation and manipulation of pathway models in BioPAX format. Pathway views are rendered in a feature-rich format, and may be laid out and edited with state-of-the-art visualization methods, including compound or nested structures for visualizing cellular compartments and molecular complexes. Users can easily query and visualize pathways through an integrated Pathway Commons query tool and analyze molecular profiles in pathway context. AVAILABILITY: http://www.bilkent.edu.tr/%7Ebcbi/chibe.html. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.en_US
dc.description.provenanceMade available in DSpace on 2016-02-08T10:00:11Z (GMT). No. of bitstreams: 1 bilkent-research-paper.pdf: 70227 bytes, checksum: 26e812c6f5156f83f0e77b261a471b5a (MD5) Previous issue date: 2010en
dc.identifier.doi10.1093/bioinformatics/btp665
dc.identifier.eissn1367-4811
dc.identifier.issn1367-4803
dc.identifier.urihttp://hdl.handle.net/11693/22446
dc.language.isoEnglishen_US
dc.publisherOxford University Pressen_US
dc.relation.isversionofhttp://dx.doi.org/10.1093/bioinformatics/btp665
dc.source.titleBioinformaticsen_US
dc.subjectBiological modelen_US
dc.subjectBiologyen_US
dc.subjectComputer graphicsen_US
dc.subjectComputer interfaceen_US
dc.subjectComputer programen_US
dc.subjectFactual databaseen_US
dc.subjectInformation retrievalen_US
dc.subjectInterneten_US
dc.subjectMethodologyen_US
dc.subjectSignal transductionen_US
dc.subjectComputational biologyen_US
dc.subjectSoftwareen_US
dc.titleChiBE: interactive visualization and manipulation of BioPAX pathway modelsen_US
dc.typeArticleen_US

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