An engineered genetic circuit for protein glycosylation in Escherichia coli

buir.advisorŞeker, Urartu Özgür Şafak
dc.contributor.authorBozkurt, Eray Ulaş
dc.date.accessioned2021-06-08T10:28:15Z
dc.date.available2021-06-08T10:28:15Z
dc.date.copyright2021-05
dc.date.issued2021-05
dc.date.submitted2021-06-03
dc.descriptionCataloged from PDF version of article.en_US
dc.descriptionThesis (M.S.): Bilkent University, Department of Materials Science and Nanotechnology, İhsan Doğramacı Bilkent University, 2021.en_US
dc.descriptionIncludes bibliographical references (leaves 60-62).en_US
dc.description.abstractProtein glycosylation is one of the most crucial and common post-translational modifications. Glycosylation provides certain advantages to host organisms and extend the proteome beyond genetic material. After the discovery of bacterial glycosylation mechanisms and especially after its transfer into laboratory work-horse E. coli, studies utilizing this mechanism increased exponentially. It has been previously showed that utilizing N-Linked Glycosylation, certain recombinant proteins have been furnished with improved features, such as stability and solubility. In this study, we utilized N-linked Glycosylation to glycosylate alkaline phosphatase (ALP) enzyme in E. coli and investigate the effects of glycosylation on an enzyme. Considering the glycosylation mechanism is highly dependent on the acceptor protein, ALP constructs carrying glycosylation tag at different locations of the gene has been created and glycosylation rates have been calculated. The most glycosylated construct has been selected for comparison with the native enzyme. Studies showed that glycosylated ALP performed better at optimal conditions. In order to extend the knowledge on the differences due to glycosylation, several conditions were applied. Both enzymes were tested at elevated temperatures for different incubation times, different pH conditions, protease treatment and under denaturing conditions. Also, secondary structure analysis was performed for each condition to elaborate on these differences. Experiments showed that glycosylated ALP performs remarkably better at all conditions tested. Therefore, N-linked Glycosylation mechanism can be employed for enzyme engineering purposes and is a useful tool for industrial applications that require enzymatic activity.en_US
dc.description.provenanceSubmitted by Betül Özen (ozen@bilkent.edu.tr) on 2021-06-08T10:28:14Z No. of bitstreams: 1 Eray Ulaş Bozkurt- An Engineered Genetic Circuit for Protein Glycosylation in Escherichia coli.pdf: 2947842 bytes, checksum: 112a64eb1990bf975ede3e047b46e994 (MD5)en
dc.description.provenanceMade available in DSpace on 2021-06-08T10:28:15Z (GMT). No. of bitstreams: 1 Eray Ulaş Bozkurt- An Engineered Genetic Circuit for Protein Glycosylation in Escherichia coli.pdf: 2947842 bytes, checksum: 112a64eb1990bf975ede3e047b46e994 (MD5) Previous issue date: 2021-05en
dc.description.statementofresponsibilityby Eray Ulaş Bozkurten_US
dc.format.extentxii, 100 leaves : illustrations, charts (some color) ; 30 cm.en_US
dc.identifier.itemidB126243
dc.identifier.urihttp://hdl.handle.net/11693/76363
dc.language.isoEnglishen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectProtein engineeringen_US
dc.subjectEnzyme kineticsen_US
dc.subjectN-linked glycosylationen_US
dc.titleAn engineered genetic circuit for protein glycosylation in Escherichia colien_US
dc.title.alternativeEscherichia coli bakterisinde protein glikolizlenmesi için devre tasarımıen_US
dc.typeThesisen_US
thesis.degree.disciplineMaterials Science and Nanotechnology
thesis.degree.grantorBilkent University
thesis.degree.levelMaster's
thesis.degree.nameMS (Master of Science)

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