Browsing by Subject "Photosynthesis"
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Item Open Access Convergent synthesis and light harvesting properties of dendritic boradiazaindacene (BODIPY) appended perylenediimide dyes(2010) Bozdemir, O. A.; Yilmaz, M. D.; Buyukcakir, O.; Siemiarczuk, A.; Tutas, M.; Akkaya, E. U.A convergent synthesis methodology, together with "click- chemistry" between azides and terminal alkynes, allows straighforward access to dendritic light harvesting systems. The novel dendrimer reported in this study has eight boradiazaindacene (BODIPY) units at the periphery and a perylenediimide (PDI) dye at the core. We have demonstrated that visible light is effectively collected as a result of the large absorption cross section of the dendrimer and efficiently channeled to the core PDI unit, resulting in a significant antenna effect. While being one of the very few energy transfer systems with a BODIPY and PDI chromophore pair, this novel dendritic molecule is one of the most efficient in light harvesting. The factors that may play important roles as the generation number increases also become apparent when emission characteristics were analyzed in comparison with a lower generation dendrimer.Item Open Access Electronic excited states of the CP29 antenna complex of green plants: a model based on exciton calculations(Springer / Kluwer Academic Publishers, 2000) İşerı, E. İ.; Albayrak, D.; Gülen, D.We have suggested a model for the electronic excited states of the minor plant antenna, CP29, by incorporating a considerable part of the current information offered by structure determination, site-directed mutagenesis, and spectroscopy in the modeling. We have assumed that the electronic excited states of the complex have been decided by the chlorophyll-chlorophyll (Chl) and Chl-protein interactions and have modeled the Coulombic interaction between a pair of Chls in the point-dipole approximation and the Chl-protein interactions are treated as empirical fit parameters. We have suggested the Qy dipole moment orientations and the site energies for all the chlorophylls in the complex through a simultaneous simulation of the absorption and linear dichroism spectra. The assignments proposed have been discussed to yield a satisfactory reproduction of all prominent features of the absorption, linear and circular dichroism spectra as well as the key spectral and temporal characteristics of the energy transfer processes among the chlorophylls. The orientations and the spectral assignments obtained by relatively simple exciton calculations have been necessary to provide a good point of departure for more detailed treatments of structure-function relationship in CP29. Moreover, it has been discussed that the CP29 model suggested can guide the studies for a better understanding of the structure-function relationship in the major plant antenna, LHCII.Item Unknown Nitrogen and sulfur deprivation differentiate lipid accumulation targets of chlamydomonas reinhardtii(2012) Cakmak, T.; Angun P.; Ozkan, A.D.; Cakmak, Z.; Olmez, T.T.; Tekinay, T.Nitrogen (N) and sulfur (S) have inter-related and distinct impacts on microalgal metabolism; with N starvation having previously been reported to induce elevated levels of the biodiesel feedstock material triacylglycerol (TAG), while S deprivation is extensively studied for its effects on biohydrogen production in microalgae.1,2 We have previously demonstrated that N- and S-starved cells of Chlamydomonas reinhardtii display different metabolic trends, suggesting that different response mechanisms exist to compensate for the absence of those two elements.3 We used C. reinhardtii CC-124 mt(-) and CC-125 mt(+) strains to test possible metabolic changes related to TAG accumulation in response to N and S deprivation, considering that gamete differentiation in this organism is mainly regulated by N.4 Our findings contribute to the understanding of microalgal response to element deprivation and potential use of element deprivation for biodiesel feedstock production using microalgae, but much remains to be elucidated on the precise contribution of both N and S starvation on microalgal metabolism. © 2012 Landes Bioscience.