Browsing by Subject "Kinetics"

Now showing 1 - 6 of 6

Open Access
Modeling of electro-kinetic motion of Janus droplet
(ASME, 2017) Öner, S. Doğan; Çetin, Barbaros
Electro-kinetic manipulation Janus particles and droplets has attracted attention in recent years due to their potential application in microfluidics. Due to the presence of two different zone on the surface of particles with different charge distribution, the motion of the Janus particles are quite different than the that of regular particles. Therefore; the fundamental understanding of this motion is the key element for the further development of the microfluidic systems with Janus particles. In present study, electro-kinetic motion of Janus droplets inside a micro-channel is modeled using boundary element formulation. 2D formulation is verified against the reported experimental data in the literature. Results show that the 2D boundary element formulation is successful for the prediction of the electrophoretic velocity of the Janus droplets. The current formulation has a potential to model non-spherical particles and to study particle-particle and particle-wall interactions.
Open Access
Monitoring molecular assembly of biofilms using quartz crystal microbalance with dissipation
(Springer, 2022) Yuca, E.; Şeker, Urartu Özgür Şafak; Arluison, Véronique; Wien, Frank; Marcoleta, Andrés
The structure and the functionality of biofilm proteins, the main components of the extracellular matrix, can be tuned by protein engineering. The use of binding kinetics data has been demonstrated in the characterization of recombinantly produced biofilm proteins to control their behavior on certain surfaces or under certain conditions. Quartz crystal microbalance with dissipation monitoring (QCM-D) allows measuring the change in resonance frequency and the energy loss and distribution upon the interaction of molecules with the surface. The characterization of the molecular assembly of curli biofilm proteins on different surfaces using QCM-D is presented here as a detailed protocol. The experimental procedure detailed in this chapter can be applied and modified for other biofilm proteins or subunits to determine their surface adsorption and kinetic binding characteristics.
Open Access
Radiochemical study of Co2+ sorption on chlorite and kaolinite
(Akademiai Kiado Rt., 1999) Shahwan, T.; Erten, H. N.
In this work, the sorption behavior of Co(II) ions on natural chlorite and kaolinite as a function of time, concentration and temperature was studied. 60Co radiotracer method and the batch technique were used. The kinetic results indicated that about one day of contact time was enough to achieve equilibrium. The sorption process was described by Freundlich type isotherms. Sorption of Co(II) ions on both clays was found to be endothermic with ΔH(o) (kJ/mol) and ΔS(o) (kJ/mol·K) being 33 and 0.14 for kaolinite and 17 and 0.102 for chlorite, respectively. The magnitudes of the corresponding ΔG(o) values suggest that sorption occur mainly via an ion exchange mechanism on both clays.
Open Access
A radiotracer study of the adsorption behavior of aqueous Ba2+ ions on nanoparticles of zero-valent iron
(2007) Çelebi O.; Üzüm, C.; Shahwan, T.; Erten H.N.
Recently, iron nanoparticles are increasingly being tested as adsorbents for various types of organic and inorganic pollutants. In this study, nanoparticles of zero-valent iron (NZVI) synthesized under atmospheric conditions were employed for the removal of Ba2+ ions in a concentration range 10-3 to 10-6 M. Throughout the study, 133Ba was used as a tracer to study the effects of time, concentration, and temperature. The obtained data was analyzed using various kinetic models and adsorption isotherms. Pseudo-second-order kinetics and Dubinin-Radushkevich isotherm model provided the best correlation with the obtained data. Observed thermodynamic parameters showed that the process is exothermic and hence enthalpy-driven. © 2007 Elsevier B.V. All rights reserved.
Open Access
Retinal proteins as model systems for membrane protein folding
(Elsevier BV, 2014) Tastan, O.; Dutta, A.; Booth, P.; Klein-Seetharaman, J.
Experimental folding studies of membrane proteins are more challenging than water-soluble proteins because of the higher hydrophobicity content of membrane embedded sequences and the need to provide a hydrophobic milieu for the transmembrane regions. The first challenge is their denaturation: due to the thermodynamic instability of polar groups in the membrane, secondary structures in membrane proteins are more difficult to disrupt than in soluble proteins. The second challenge is to refold from the denatured states. Successful refolding of membrane proteins has almost always been from very subtly denatured states. Therefore, it can be useful to analyze membrane protein folding using computational methods, and we will provide results obtained with simulated unfolding of membrane protein structures using the Floppy Inclusions and Rigid Substructure Topography (FIRST) method. Computational methods have the advantage that they allow a direct comparison between diverse membrane proteins. We will review here both, experimental and FIRST studies of the retinal binding proteins bacteriorhodopsin and mammalian rhodopsin, and discuss the extension of the findings to deriving hypotheses on the mechanisms of folding of membrane proteins in general. This article is part of a Special Issue entitled: Retinal Proteins - You can teach an old dog new tricks.
Open Access
Tailoring insoluble nanobelts into soluble anti-UV nanopotpourris
(Royal Society of Chemistry, 2011) Wang, J.; Sun, X. W.; Jiao, Z.; Khoo, E.; Lee, P. S.; Ma, J.; Demir, Hilmi Volkan
Soluble, transparent and anti-UV nanopotpourris have been prepared by tailoring long nanobelts. The strains and layered structures facilitate the breaking of the as-synthesized nanobelts under an applied mechanical action. The developed tailoring process of nanobelts is a general top-down secondary processing of layered nanostructures at the nanoscale level, which can be expended to the modifications of layered nanowires, nanotubes and hierarchical nanostructures. By tailoring, the size, morphology and solubility are modified, which may open up an area of advanced processing of nanomaterials and hint at some potential applications. Because of the excellent solubility of the tailored nanopotpourris, they are easily dispersed in cosmetics or polymer films, which are quite useful for some anti-UV protection applications, such as anti-UV sunscreen creams and anti-UV window films for vehicles and buildings.