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    Detecting COVID-19 from respiratory sound recordings with transformers
    (S P I E - International Society for Optical Engineering, 2022-04-04) Aytekin, İdil; Dalmaz, Onat; Ankishan, Haydar; Sarıtaş, Emine Ü.; Bağcı, Ulaş; Çukur, Tolga; Çelik, Haydar
    Auscultation is an established technique in clinical assessment of symptoms for respiratory disorders. Auscultation is safe and inexpensive, but requires expertise to diagnose a disease using a stethoscope during hospital or office visits. However, some clinical scenarios require continuous monitoring and automated analysis of respiratory sounds to pre-screen and monitor diseases, such as the rapidly spreading COVID-19. Recent studies suggest that audio recordings of bodily sounds captured by mobile devices might carry features helpful to distinguish patients with COVID-19 from healthy controls. Here, we propose a novel deep learning technique to automatically detect COVID-19 patients based on brief audio recordings of their cough and breathing sounds. The proposed technique first extracts spectrogram features of respiratory recordings, and then classifies disease state via a hierarchical vision transformer architecture. Demonstrations are provided on a crowdsourced database of respiratory sounds from COVID-19 patients and healthy controls. The proposed transformer model is compared against alternative methods based on state-of-the-art convolutional and transformer architectures, as well as traditional machine-learning classifiers. Our results indicate that the proposed model achieves on par or superior performance to competing methods. In particular, the proposed technique can distinguish COVID-19 patients from healthy subjects with over 94% AUC.