Browsing by Subject "Attributed relational graph"
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Item Open Access Attributed relational graphs for cell nucleus segmentation in fluorescence microscopy images(IEEE, 2013) Arslan, S.; Ersahin, T.; Cetin-Atalay, R.; Gunduz-Demir, C.More rapid and accurate high-throughput screening in molecular cellular biology research has become possible with the development of automated microscopy imaging, for which cell nucleus segmentation commonly constitutes the core step. Although several promising methods exist for segmenting the nuclei of monolayer isolated and less-confluent cells, it still remains an open problem to segment the nuclei of more-confluent cells, which tend to grow in overlayers. To address this problem, we propose a new model-based nucleus segmentation algorithm. This algorithm models how a human locates a nucleus by identifying the nucleus boundaries and piecing them together. In this algorithm, we define four types of primitives to represent nucleus boundaries at different orientations and construct an attributed relational graph on the primitives to represent their spatial relations. Then, we reduce the nucleus identification problem to finding predefined structural patterns in the constructed graph and also use the primitives in region growing to delineate the nucleus borders. Working with fluorescence microscopy images, our experiments demonstrate that the proposed algorithm identifies nuclei better than previous nucleus segmentation algorithms. © 2012 IEEE.Item Open Access Mining of remote sensing image archives using spatial relationship histograms(IEEE, 2008-07) Kalaycılar, Fırat; Kale, Aslı; Zamalieva, Daniya; Aksoy, SelimWe describe a new image representation using spatial relationship histograms that extend our earlier work on modeling image content using attributed relational graphs. These histograms are constructed by classifying the regions in an image, computing the topological and distance-based spatial relationships between these regions, and counting the number of times different groups of regions are observed in the image. We also describe a selection algorithm that produces very compact representations by identifying the distinguishing region groups that are frequently found in a particular class of scenes but rarely exist in others. Experiments using Ikonos scenes illustrate the effectiveness of the proposed representation in retrieval of images containing complex types of scenes such as dense and sparse urban areas. © 2008 IEEE.