Browsing by Subject "Analysis of variance"

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Open Access
Aging alters the molecular dynamics of synapses in a sexually dimorphic pattern in zebrafish (Danio rerio)
(Elsevier, 2017-06) Karoglu, Elif Tugce; Halim, Dilara Ozge; Erkaya, Bahriye; Altaytas, Ferda; Arslan-Ergul, Ayca; Konu, Ozlen; Adams, Michelle M.
The zebrafish has become a popular model for studying normal brain aging due to its large fecundity, conserved genome, and available genetic tools; but little data exists about neurobiological age-related alterations. The current study tested the hypothesis of an association between brain aging and synaptic protein loss across males and females. Western blot analysis of synaptophysin (SYP), a presynaptic vesicle protein, and postsynaptic density-95 (PSD-95) and gephyrin (GEP), excitatory and inhibitory postsynaptic receptor-clustering proteins, respectively, was performed in young, middle-aged, and old male and female zebrafish (Danio rerio) brains. Univariate and multivariate analyses demonstrated that PSD-95 significantly increased in aged females and SYP significantly decreased in males, but GEP was stable. Thus, these key synaptic proteins vary across age in a sexually dimorphic manner, which has been observed in other species, and these consequences may represent selective vulnerabilities for aged males and females. These data expand our knowledge of normal aging in zebrafish, as well as further establish this model as an appropriate one for examining human brain aging.
Open Access
Quantification of SLIT-ROBO transcripts in hepatocellular carcinoma reveals two groups of genes with coordinate expression
(BioMed Central, 2008) Avci, M. E.; Konu, O.; Yagci, T.
Background: SLIT-ROBO families of proteins mediate axon pathfinding and their expression is not solely confined to nervous system. Aberrant expression of SLIT-ROBO genes was repeatedly shown in a wide variety of cancers, yet data about their collective behavior in hepatocellular carcinoma (HCC) is missing. Hence, we quantified SLIT-ROBO transcripts in HCC cell lines, and in normal and tumor tissues from liver. Methods: Expression of SLIT-ROBO family members was quantified by real-time qRT-PCR in 14 HCC cell lines, 8 normal and 35 tumor tissues from the liver. ANOVA and Pearson's correlation analyses were performed in R environment, and different clinicopathological subgroups were pairwise compared in Minitab. Gene expression matrices of cell lines and tissues were analyzed by Mantel's association test. Results: Genewise hierarchical clustering revealed two subgroups with coordinate expression pattern in both the HCC cell lines and tissues: ROBO1, ROBO2, SLIT1 in one cluster, and ROBO4, SLIT2, SLIT3 in the other, respectively. Moreover, SLIT-ROBO expression predicted AFP-dependent subgrouping of HCC cell lines, but not that of liver tissues. ROBO1 and ROBO2 were significantly up-regulated, whereas SLIT3 was significantly down-regulated in cell lines with high-AFP background. When compared to normal liver tissue, ROBO1 was found to be significantly overexpressed, while ROBO4 was down-regulated in HCC. We also observed that ROBO1 and SLIT2 differentiated histopathological subgroups of liver tissues depending on both tumor staging and differentiation status. However, ROBO4 could discriminate poorly differentiated HCC from other subgroups. Conclusion: The present study is the first in comprehensive and quantitative evaluation of SLIT-ROBO family gene expression in HCC, and suggests that the expression of SLIT-ROBO genes is regulated in hepatocarcinogenesis. Our results implicate that SLIT-ROBO transcription profile is bi-modular in nature, and that each module shows intrinsic variability. We also provide quantitative evidence for potential use of ROBO1, ROBO4 and SLIT2 for prediction of tumor stage and differentiation status.
Open Access
Time-related wettability characteristic of acrylic resin surfaces treated by glow discharge
(Elsevier, 1999-12) Özden, N.; Akaltan, F.; Süzer, Şefik; Akovali, G.
STATEMENT OF PROBLEM: Adhesion and cohesion have important roles in denture retention, and attempts have been made to improve the wettability of the acrylic resin material by surface treatments. PURPOSE: This study examined the initial and subsequent wettability of an acrylic resin denture base material treated under air or argon plasma atmosphere before and after exposure to air or distilled water. MATERIAL AND METHODS: Acrylic resin specimens were treated with plasma under air or argon atmosphere and were either exposed to air or distilled water for up to 60 days. Wettability characteristics of the acrylic resin specimens were determined by contact-angle measurements after 2 hours and after 60 days. Surface composition of the specimens also was analyzed with x-ray photoelectron spectroscopic (XPS) measurements. RESULTS: Statistically significant difference was found between control and each of the plasma treatment groups (P <.05). Although the storage condition and storage period caused statistically significant difference on contact angle values (P <.05), atmosphere type did not have any effect on the results (P >.05). XPS spectra of the plasma-treated specimens differed from control specimens only in the O1s region with a narrower and more intense peak that could be assigned to -COH groups. During 60 days of exposure, the O/C atomic ratios decreased within the first 2 weeks but settled to 0.40 and 0. 32 up to 60 days compared with 0.26 for untreated control specimens. CONCLUSION: Glow discharge plasma altered the surfaces of the acrylic resin and increased thc wettability as shown both by XPS and contact-angle measurements, and plasma treatment seemed to offer a durable (at least up to 60 days) wettability.