Browsing by Subject "Adatoms"
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Item Open Access Ab initio temperature dependent studies of the homoepitaxial growth on Si(0 0 1) surface(2001) Dağ, S.; Çıracı, Salim; Kılıç, Ç.; Fong, C. Y.We performed ab initio zero temperature and finite temperature molecular dynamics calculations to investigate the homoepitaxial growth on the Si(0 0 1) surface. How do the deposited atoms (adatoms) form addimers and how do the addimers reach their favorable positions at the nucleation site of the growth process are presented. Once two epitaxial addimers, one over the dimer row and oriented perpendicular to the surface dimer bonds and the other over the adjacent trough, are aligned at high temperature, the nucleation site of the growth process is formed. The concerted bond exchange between these addimers and the reconstructed surface dimers is found to be the atomistic mechanism that leads to the homoepitaxial growth. © 2001 Elsevier Science B.V.Item Open Access Adsorption of group IV elements on graphene, silicene, germanene and stanene: dumbbell formation(ACS Publications, 2014-12-09) Ozcelik, V. O.; Kecik, D.; Durgun, Engin; Çıracı, SalimSilicene and germanene derivatives constructed from periodic dumbbell units play a crucial role in multilayers of these honeycomb structures. Using first-principles calculations based on density functional theory, here we investigate the dumbbell formation mechanisms and energetics of Group IV atoms adsorbed on graphene, silicene, germanene and stanene monolayer honeycomb structures. The stabilities of the binding structures are further confirmed by performing ab-initio molecular dynamics calculations at elevated temperatures, except for stanene which is subject to structural instability upon the adsorption of adatoms. Depending on the row number of the adatoms and substrates we find three types of binding structures, which lead to significant changes in the electronic, magnetic, and optical properties of substrates. In particular, Si, Ge and Sn adatoms adsorbed on silicene and germanene form dumbbell structures. Furthermore, dumbbell structures occur not only on single layer, monatomic honeycomb structures, but also on their compounds like SiC and SiGe. We show that the energy barrier to the migration of a dumbbell structure is low due to the concerted action of atoms. This renders dumbbells rather mobile on substrates to construct new single and multilayer Si and Ge phases.Item Open Access Effects of silicon and germanium adsorbed on graphene(A I P Publishing LLC, 2010) Aktürk, E.; Ataca, C.; Çıracı, SalimBased on the first-principles plane wave calculations, we studied the adsorption of Si and Geon graphene. We found that these atoms are bound to graphene at the bridge site with a significant binding energy, while many other atoms are bound at the hollow site above the center of hexagon. It is remarkable that these adatoms may induce important changes in the electronic structure of graphene even at low coverage. Semimetallic graphene becomes metallized and attains a magnetic moment. The combination of adatom orbitals with those of ππ- and π∗π∗-states of bare graphene is found responsible for these effects.Item Open Access Finite temperature studies of Te adsorption on Si(0 0 1)(Elsevier, 2002) Sen, P.; Çıracı, Salim; Batra, I. P.; Grein, C. H.; Sivananthan, S.We perform first principles density functional calculations to investigate the adsorption of Te on the Si(0 0 1) surface from low coverage up to a monolayer coverage. At low coverage, a Te atom is adsorbed on top of the Si surface dimer bond. At higher coverages, Te atoms adsorption causes the Si-Si dimer bond to break, lifting the (2 × 1) reconstruction. We find no evidence of the Te-Te dimer bond formation as a possible source of the (2 × 1) reconstruction at a monolayer coverage. Finite temperature ab initio molecular dynamics calculations show that Te covered Si(0 0 1) surfaces do not have any definitive reconstruction. Vibrations of the bridged Te atoms in the strongly anharmonic potentials prevent the reconstruction structure from attaining any permanent, two-dimensional periodic geometry. This explains why experiments attempting to find a definite model for the reconstruction reached conflicting conclusions. © 2002 Elsevier Science B.V. All rights reserved.Item Open Access Interaction of adatoms and molecules with single-layer arsenene phases(American Chemical Society, 2016-06) Ersan, F.; Aktürk, E.; Çıracı, SalimRecent studies have shown that arsenic can form single-layer phases in buckled honeycomb as well as symmetric washboard structures, named as arsenene. These structures are stable even in freestanding form and are nonmagnetic semiconductors in the energy range which is suitable for various electronic applications. In this study we investigated the adsorption of selected adatoms (H, Li, B, C, N, O, Al, Si, P, Cl, Ti, Ga, Ge, As, Se, and Sb) and physisorption of molecules (H2, O2, and H2O) to these two arsene phases. Since the interaction of these adspecies with arsenene are studied using large supercells, the coupling between adspecies is minimized, and hence our results can be interpreted to mimic the effects of isolated adatom or physisorbed molecule. It is found that the adatoms form strong chemisorption bonds and hence modify the atomic structure and physical properties locally. Some of the adatoms give rise to significant local reconstruction of the atomic structure. Electronic states of some adatoms become spin polarized and attain net magnetic moments; they may even display half-metallic character at high coverage. A majority of adsorbed atoms give rise to localized states in the fundamental band gap. We showed that the interactions between H2, O2, and H2O molecules and single-layer arsenene are rather weak and do not cause any significant changes in the physical properties of these molecules, as well as those of arsenene phases. However, some of these molecules can be dissociated at the edges of the flakes of arsenene structures; their constituents are adsorbed to the edge atoms and cause local reconstructions.