Browsing by Author "Sarioglu O.F."

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Open Access
Bacteria encapsulated electrospun nanofibrous webs for remediation of methylene blue dye in water
(Elsevier, 2017-04) Sarioglu O.F.; Keskin, N. O. S.; Celebioglu A.; Tekinay, T.; Uyar, Tamer
In this study, preparation and application of novel biocomposite materials that were produced by encapsulation of bacterial cells within electrospun nanofibrous webs are described. A commercial strain of Pseudomonas aeruginosa which has methylene blue (MB) dye remediation capability was selected for encapsulation, and polyvinyl alcohol (PVA) and polyethylene oxide (PEO) were selected as the polymer matrices for the electrospinning of bacteria encapsulated nanofibrous webs. Encapsulation of bacterial cells was monitored by scanning electron microscopy (SEM) and fluorescence microscopy, and the viability of encapsulated bacteria was checked by live/dead staining and viable cell counting assay. Both bacteria/PVA and bacteria/PEO webs have shown a great potential for remediation of MB, yet bacteria/PEO web has shown higher removal performances than bacteria/PVA web, which was probably due to the differences in the initial viable bacterial cells for those two samples. The bacteria encapsulated electrospun nanofibrous webs were stored at 4 °C for three months and they were found as potentially storable for keeping encapsulated bacterial cells alive. Overall, the results suggest that electrospun nanofibrous webs are suitable platforms for preservation of living bacterial cells and they can be used directly as a starting inoculum for bioremediation of water systems.
Open Access
Bacteria immobilized electrospun polycaprolactone and polylactic acid fibrous webs for remediation of textile dyes in water
(Elsevier, 2017-10) Sarioglu O.F.; S. Keskin, N. O.; Celebioglu A.; Tekinay, T.; Uyar, Tamer
In this study, preparation and application of novel biocomposite materials for textile dye removal which are produced by immobilization of specific bacteria onto electrospun nanofibrous webs are presented. A textile dye remediating bacterial isolate, Clavibacter michiganensis, was selected for bacterial immobilization, a commercial reactive textile dye, Setazol Blue BRF-X, was selected as the target contaminant, and electrospun polycaprolactone (PCL) and polylactic acid (PLA) nanofibrous polymeric webs were selected for bacterial integration. Bacterial adhesion onto nanofibrous webs was monitored by scanning electron microscopy (SEM) imaging and optical density (OD) measurements were performed for the detached bacteria. After achieving sufficient amounts of immobilized bacteria on electrospun nanofibrous webs, equivalent web samples were utilized for testing the dye removal capabilities. Both bacteria/PCL and bacteria/PLA webs have shown efficient remediation of Setazol Blue BRF-X dye within 48 h at each tested concentration (50, 100 and 200 mg/L), and their removal performances were very similar to the free-bacteria cells. The bacteria immobilized webs were then tested for five times of reuse at an initial dye concentration of 100 mg/L, and found as potentially reusable with higher bacterial immobilization and faster dye removal capacities at the end of the test. Overall, these findings suggest that electrospun nanofibrous webs are available platforms for bacterial integration and the bacteria immobilized webs can be used as starting inocula for use in remediation of textile dyes in wastewater systems.
Open Access
Comparative serum albumin interactions and antitumor effects of Au(III) and Ga(III) ions
(Urban und Fischer Verlag GmbH und Co. KG, 2015) Sarioglu O.F.; Ozdemir, A.; Karaboduk, K.; Tekinay, T.
In the present study, interactions of Au(III) and Ga(III) ions on human serum albumin (HSA) were studied comparatively via spectroscopic and thermal analysis methods: UV-vis absorbance spectroscopy, fluorescence spectroscopy, Fourier transform infrared (FT-IR) spectroscopy and isothermal titration calorimetry (ITC). The potential antitumor effects of these ions were studied on MCF-7 cells via Alamar blue assay. It was found that both Au(III) and Ga(III) ions can interact with HSA, however; Au(III) ions interact with HSA more favorably and with a higher affinity. FT-IR second derivative analysis results demonstrated that, high concentrations of both metal ions led to a considerable decrease in the α-helix content of HSA; while Au(III) led to around 5% of decrease in the α-helix content at 200μM, it was around 1% for Ga(III) at the same concentration. Calorimetric analysis gave the binding kinetics of metal-HSA interactions; while the binding affinity (Ka) of Au(III)-HSA binding was around 3.87×105M-1, it was around 9.68×103M-1 for Ga(III)-HSA binding. Spectroscopy studies overall suggest that both metal ions have significant effects on the chemical structure of HSA, including the secondary structure alterations. Antitumor activity studies on MCF7 tumor cell line with both metal ions revealed that, Au(III) ions have a higher antiproliferative activity compared to Ga(III) ions. © 2014 Elsevier GmbH.
Open Access
Comparison of Au(III) and Ga(III) ions' binding to calf thymus DNA: Spectroscopic characterization and thermal analysis
(Humana Press Inc., 2014) Sarioglu O.F.; Tekiner-Gursacli, R.; Ozdemir, A.; Tekinay, T.
Metals have been studied as potential chemotherapeutic agents for cancer therapies due to their high reactivity toward a wide variety of substances. The characterization of metal ion-binding capacities is essential to understand the possible effects of metals on target biomolecules. In the present study, biochemical effects of Au(III) and Ga(III) ions on calf thymus DNA (ctDNA) were studied comparatively via bioanalytical, spectroscopic, and thermal methods. Briefly, UV-Vis absorbance spectroscopy, fluorescence spectroscopy, circular dichroism (CD) spectroscopy, and Fourier transform infrared (FT-IR) spectroscopy were utilized for spectroscopic characterization, and isothermal titration calorimetry (ITC) measurements were performed for thermal analysis. Our results reveal that both Au(III) and Ga(III) ions are capable of interacting with ctDNA, and Au(III) ions display a more favorable interaction and a higher binding affinity. ITC analyses indicate that the Au(III)-DNA interaction displays a binding affinity (Ka) around 1.43×106 M -1, while a Ka around 1.17×105 M -1 was observed for the Ga(III)-DNA binding. It was suggested that both metal ions are unlikely to change the structural B-conformation while interacting with ctDNA. © 2014 Springer Science+Business Media.
Open Access
Evaluation of contact time and fiber morphology on bacterial immobilization for development of novel surfactant degrading nanofibrous webs
(Royal Society of Chemistry, 2015) Sarioglu O.F.; Celebioglu A.; Tekinay, T.; Uyar, Tamer
Novel electrospun fibrous biocomposites were developed by immobilizing two different sodium dodecyl sulfate (SDS) biodegrading bacterial strains, Serratia proteamaculans STB3 and Achromobacter xylosoxidans STB4 on electrospun non-porous cellulose acetate (nCA) and porous cellulose acetate (pCA) webs. The required contact time for bacterial immobilization was determined by SEM imaging and viable cell counting of the immobilized bacteria, and bacterial attachment was ended at day 25 based on these results. SDS biodegradation capabilities of bacteria immobilized webs were evaluated at different concentrations of SDS, and found to be highly efficient at concentrations up to 100 mg L-1. It was observed that SDS remediation capabilities of bacteria immobilized webs were primarily based on the bacterial existence and very similar to the free-bacterial cells. A reusability test was applied on the two most efficient webs (STB3/pCA and STB4/pCA) at 100 mg L-1 SDS, and the results suggest that the webs are potentially reusable and improvable for SDS remediation in water. SEM images of bacteria immobilized webs after the reusability test demonstrate strong bacterial adhesion onto the fibrous surfaces, which was also supported by the viable cell counting results. Our results are highly promising and suggest that bacteria immobilized electrospun fibrous webs have the potential to be used effectively and continually for remediation of SDS from aqueous environments.
Open Access
Evaluation of fiber diameter and morphology differences for electrospun fibers on bacterial immobilization and bioremediation performance
(Elsevier, 2017-05) Sarioglu O.F.; Celebioglu A.; Tekinay, T.; Uyar, Tamer
In this report, morphology and fiber diameter differences of electrospun polysulfone (PSU) fibers on bacterial immobilization and bioremediation performance were evaluated. PSU fibers were produced with aligned or randomly oriented morphologies, and PSU fibers with thinner and thicker diameters were also produced. PSU fibers were utilized as carrier matrices for bacterial integration and the sample showing highest bacterial immobilization was tested for bioremediation of ammonium and methylene blue dye in water. It was found that randomly oriented and thinner PSU fibers are the optimal system for bacterial immobilization, hence bioremediation studies were performed with this sample. The results demonstrated that bacteria immobilized PSU fibers are promising candidates for simultaneous removal of ammonium and methylene blue dye, and they have a potential to be used in remediation of water systems.
Open Access
Heterotrophic ammonium removal by a novel hatchery isolate Acinetobacter calcoaceticus STB1
(2012) Sarioglu O.F.; Suluyayla, R.; Tekinay, T.
A novel bacterial strain, STB1, was isolated from a commercial sea bass hatchery and found to display high heterotrophic ammonium removal characteristics at different concentrations of ammonium (NH4+-N). The species identity of STB1 was determined via 16S rRNA gene sequence analysis to be Acinetobacter calcoaceticus. We evaluated ammonium removal characteristics of STB1 at varying ammonium concentrations, and observed that STB1 can almost completely remove ammonium at low (50 mg l -1), and medium (100 mg l -1) concentrations within 72 h, while 45% ammonium removal was observed at a higher concentration (210 mg l -1) during the same period. Trace amount of the metabolized ammonium was converted to nitrite or nitrate and 22.16% of total nitrogen was incorporated into cell biomass, while 4.34% of total nitrogen was initially incorporated into cell biomass and subsequently released to the supernatant fraction in the 100 mg l -1 sample. Most of the remaining conversion products are expected to be gaseous denitrification products. Toxicological studies with Artemia salina (brine shrimp) nauplii revealed that STB1 strain is non-toxic to Artemia larvae, which suggests that STB1 can be safely and efficiently utilized in water quality enrichment in aquatic ecosystems. © 2012 Elsevier Ltd.
Open Access
Removal of a reactive dye and hexavalent chromium by a reusable bacteria attached electrospun nanofibrous web
(Royal Society of Chemistry, 2015) Keskin, N. O. S.; Celebioglu A.; Sarioglu O.F.; Ozkan A.D.; Uyar, Tamer; Tekinay, T.
A contaminant resistant Lysinibacillus sp. NOSK was isolated from a soil sample and its Reactive Black 5 (RB5) and Cr(vi) removal efficiencies were investigated as a function of changes in the initial pH values, temperature, static/shaking conditions, reactive dye and Cr(vi) concentrations. In this study, an electrospun polysulfone nanofibrous web (PSU-NFW) was found to be effective in attachment of bacterial cells. Bacteria attached PSU-NFWs (bacteria/PSU-NFW) have shown highly efficient removal of RB5, as 99.7 ± 0.9% and 35.8 ± 0.4% for the pristine PSU-NFW. Moreover, the highest Cr(vi) removal efficiencies measured were 98.2 ± 0.6% for bacteria attached PSU-NFW and 32.6 ± 0.6% for the pristine PSU-NFW. Simultaneous removal of RB5 and Cr(vi) were also investigated. Reusability test results indicate that, bacteria/PSU-NFW can be reused for at least 7 cycles with 28.1 ± 0.6% and 66.7 ± 0.8% removal efficiencies for RB5 and Cr(vi), respectively.