Browsing by Author "Oran, O. F."

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Open Access
Convection-reaction equation based magnetic resonance electrical properties tomography (cr-MREPT)
(Institute of Electrical and Electronics Engineers Inc., 2014) Hafalir, F. S.; Oran, O. F.; Gurler, N.; Ider, Y. Z.
Images of electrical conductivity and permittivity of tissues may be used for diagnostic purposes as well as for estimating local specific absorption rate distributions. Magnetic resonance electrical properties tomography (MREPT) aims at noninvasively obtaining conductivity and permittivity images at radio-frequency frequencies of magnetic resonance imaging systems. MREPT algorithms are based on measuring the B1 field which is perturbed by the electrical properties of the imaged object. In this study, the relation between the electrical properties and the measured B1 field is formulated for the first time as a well-known convection-reaction equation. The suggested novel algorithm, called 'cr-MREPT,' is based on the solution of this equation on a triangular mesh, and in contrast to previously proposed algorithms, it is applicable in practice not only for regions where electrical properties are relatively constant but also for regions where they vary. The convective field of the convection-reaction equation depends on the spatial derivatives of the B1 field, and in the regions where its magnitude is low, a spot-like artifact is observed in the reconstructed electrical properties images. For eliminating this artifact, two different methods are developed, namely 'constrained cr-MREPT' and 'double-excitation cr-MREPT.' Successful reconstructions are obtained using noisy and noise-free simulated data, and experimental data from phantoms.
Open Access
Feasibility of conductivity imaging using subject eddy currents induced by switching of MRI gradients
(John Wiley and Sons Inc., 2017) Oran, O. F.; Ider, Y. Z.
Purpose: To investigate the feasibility of low-frequency conductivity imaging based on measuring the magnetic field due to subject eddy currents induced by switching of MRI z-gradients. Methods: We developed a simulation model for calculating subject eddy currents and the magnetic fields they generate (subject eddy fields). The inverse problem of obtaining conductivity distribution from subject eddy fields was formulated as a convection-reaction partial differential equation. For measuring subject eddy fields, a modified spin-echo pulse sequence was used to determine the contribution of subject eddy fields to MR phase images. Results: In the simulations, successful conductivity reconstructions were obtained by solving the derived convection-reaction equation, suggesting that the proposed reconstruction algorithm performs well under ideal conditions. However, the level of the calculated phase due to the subject eddy field in a representative object indicates that this phase is below the noise level and cannot be measured with an uncertainty sufficiently low for accurate conductivity reconstruction. Furthermore, some artifacts other than random noise were observed in the measured phases, which are discussed in relation to the effects of system imperfections during readout. Conclusion: Low-frequency conductivity imaging does not seem feasible using basic pulse sequences such as spin-echo on a clinical MRI scanner. Magn Reson Med 77:1926–1937, 2017. © 2016 International Society for Magnetic Resonance in Medicine. © 2016 International Society for Magnetic Resonance in Medicine
Open Access
Fourier transform magnetic resonance current density imaging (FT-MRCDI) from one component of magnetic flux density
(IOP Publishing, 2010-05-17) Ider, Y. Z.; Birgul, O.; Oran, O. F.; Arıkan, Orhan; Hamamura, M. J.; Muftuler, L. T.
Fourier transform (FT)-based algorithms for magnetic resonance current density imaging (MRCDI) from one component of magnetic flux density have been developed for 2D and 3D problems. For 2D problems, where current is confined to the xy-plane and z-component of the magnetic flux density is measured also on the xy-plane inside the object, an iterative FT-MRCDI algorithm is developed by which both the current distribution inside the object and the z-component of the magnetic flux density on the xy-plane outside the object are reconstructed. The method is applied to simulated as well as actual data from phantoms. The effect of measurement error on the spatial resolution of the current density reconstruction is also investigated. For 3D objects an iterative FT-based algorithm is developed whereby the projected current is reconstructed on any slice using as data the Laplacian of the z-component of magnetic flux density measured for that slice. In an injected current MRCDI scenario, the current is not divergence free on the boundary of the object. The method developed in this study also handles this situation.
Open Access
Magnetic resonance electrical impedance tomography (MREIT) based on the solution of the convection equation using FEM with stabilization
(Institute of Physics Publishing, 2012-07-27) Oran, O. F.; Ider, Y. Z.
Most algorithms for magnetic resonance electrical impedance tomography (MREIT) concentrate on reconstructing the internal conductivity distribution of a conductive object from the Laplacian of only one component of the magnetic flux density (∇ 2B z) generated by the internal current distribution. In this study, a new algorithm is proposed to solve this ∇ 2B z-based MREIT problem which is mathematically formulated as the steady-state scalar pure convection equation. Numerical methods developed for the solution of the more general convectiondiffusion equation are utilized. It is known that the solution of the pure convection equation is numerically unstable if sharp variations of the field variable (in this case conductivity) exist or if there are inconsistent boundary conditions. Various stabilization techniques, based on introducing artificial diffusion, are developed to handle such cases and in this study the streamline upwind Petrov-Galerkin (SUPG) stabilization method is incorporated into the Galerkin weighted residual finite element method (FEM) to numerically solve the MREIT problem. The proposed algorithm is tested with simulated and also experimental data from phantoms. Successful conductivity reconstructions are obtained by solving the related convection equation using the Galerkin weighted residual FEM when there are no sharp variations in the actual conductivity distribution. However, when there is noise in the magnetic flux density data or when there are sharp variations in conductivity, it is found that SUPG stabilization is beneficial.