Browsing by Author "Kelleci, Mehmet"

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Open Access
Atmospheric pressure mass spectrometry of single viruses and nanoparticles by nanoelectromechanical systems
(American Chemical Society, 2022-01-04) Erdogan, R. Tufan; Alkhaled, Mohammed; Kaynak, Batuhan E.; Alhmoud, Hashim; Pisheh, Hadi Sedaghat; Kelleci, Mehmet; Karakurt, Ilbey; Yanik, C.; Şen, Zehra Betül; Sari, B.; Yagci, A. M.; Özkul, A.; Hanay, M. Selim
Mass spectrometry of intact nanoparticles and viruses can serve as a potent characterization tool for material science and biophysics. Inaccessible by widespread commercial techniques, the mass of single nanoparticles and viruses (>10MDa) can be readily measured by nanoelectromechanical systems (NEMS)-based mass spectrometry, where charged and isolated analyte particles are generated by electrospray ionization (ESI) in air and transported onto the NEMS resonator for capture and detection. However, the applicability of NEMS as a practical solution is hindered by their miniscule surface area, which results in poor limit-of-detection and low capture efficiency values. Another hindrance is the necessity to house the NEMS inside complex vacuum systems, which is required in part to focus analytes toward the miniscule detection surface of the NEMS. Here, we overcome both limitations by integrating an ion lens onto the NEMS chip. The ion lens is composed of a polymer layer, which charges up by receiving part of the ions incoming from the ESI tip and consequently starts to focus the analytes toward an open window aligned with the active area of the NEMS electrostatically. With this integrated system, we have detected the mass of gold and polystyrene nanoparticles under ambient conditions and with two orders-of-magnitude improvement in capture efficiency compared to the state-of-the-art. We then applied this technology to obtain the mass spectrum of SARS-CoV-2 and BoHV-1 virions. With the increase in analytical throughput, the simplicity of the overall setup, and the operation capability under ambient conditions, the technique demonstrates that NEMS mass spectrometry can be deployed for mass detection of engineered nanoparticles and biological samples efficiently.
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Cumhuriyet Dönemi’nde metroloji ve Ulusal Metroloji Enstitüsü
(Bilkent University, 2014) Karakurt, İlbey; Vardar, Onur; Kelleci, Mehmet; Aslanbaş, Levent; Oğuz Erbil, Selçuk
Open Access
A novel analogy: application of higher-order mode theory in the mechanical domain to the electromagnetic domain
(2018-08) Kelleci, Mehmet
It is crucial to engineer novel detection schemes that can extract information pertinent to the morphological properties of the analytes for widespread usage of lab-on-a-chip technology. Within the scope of this thesis, a novel method that is originated in mechanical domain based on NEMS resonators is adapted to electromagnetic domain with employment of electromagnetic resonators operate in microwave regime. The viability of the proposed method is assessed both by experiments and simulations. The designed micro uidic channel embedded microstrip resonator is driven at its rst two resonant modes simultaneously by a phase-locked loop to detect the analyte passage events within the channel. The attained resolution is 2x10􀀀8 for both modes at the response time in terms of allan deviation. With the detection scheme we constructed, the location and electrical volume of the microdroplets and cells are obtained. It is shown that the two-mode detection scheme based on microwave resonators can be extended to applications that exploits even higher-order modes to obtain the size, orientation, skewness and permittivity information of the target analytes. Morevover, the framework presented here forms a base for a novel imaging application that can be alternative to optical microscopy.
Open Access
On-chip flow rate sensing via membrane deformation and bistability probed by microwave resonators
(Springer Link, 8-04-2023) Seçme, Arda; Pisheh, Hadi Sedaghat; Tefek, Uzay; Uslu, H. Dilara; Küçükoğlu, Berk; Alataş, Ceren; Kelleci, Mehmet; Hanay, Mehmet Selim
Precise monitoring of fluid flow rates constitutes an integral problem in various lab-on-a-chip applications. While off-chip flow sensors are commonly used, new sensing mechanisms are being investigated to address the needs of increasingly complex lab-on-a-chip platforms which require local and non-intrusive flow rate sensing. In this regard, the deformability of microfluidic components has recently attracted attention as an on-chip sensing mechanism. To develop an on-chip flow rate sensor, here we utilized the mechanical deformations of a 220 nm thick Silicon Nitride membrane integrated with the microfluidic channel. Applied pressure and fluid flow induce different modes of deformations on the membrane, which are electronically probed by an integrated microwave resonator. The flow changes the capacitance, and in turn resonance frequency, of the microwave resonator. By tracking the resonance frequency, liquid flow was probed with the device. In addition to responding to applied pressure by deflection, the membrane also exhibits periodic pulsation motion under fluid flow at a constant rate. The two separate mechanisms, deflection and pulsation, constitute sensing mechanisms for pressure and flow rate. Using the same device architecture, we also detected pressure-induced deformations by a gas to draw further insight into the sensing mechanism of the membrane. Flow rate measurements based on the deformation and instability of thin membranes demonstrate the transduction potential of microwave resonators for fluid–structure interactions at micro- and nanoscales.
Open Access
On-chip liquid and gas flow rate sensing via membrane deformation and bistability probed by microwave resonators
(Springer, 2022-11-15) Seçme, Arda; Pisheh, Hadi Sedaghat; Uslu, H. Dilara; Tefek, Uzay; Küçükoğlu, Berk; Alataş, Ceren; Kelleci, Mehmet; Hanay, M. Selim
Abstract Precise monitoring of fluid flow rates constitutes an integral problem in various lab-on-a-chip applications. While off-chip flow sensors are commonly used, new sensing mechanisms are being investigated to address the needs of increasingly complex lab-on-a-chip platforms which require local and non-intrusive flow rate sensing. In this regard, the deformability of microfluidic components has recently attracted attention as an on-chip sensing mechanism. To develop an on-chip flow rate sensor, here we utilized the mechanical deformations of a 220 nm thick Silicon Nitride membrane integrated with the microfluidic channel. Fluid flow induces deformations on the membrane, which is electronically probed by the changes in the capacitance and resonance frequency of an overlapping microwave resonator. By tracking the resonance frequency, both liquid and gas flows were probed with the same device architecture. For liquid flow experiments, a secondary sensing mechanism emerged when it was observed that steady liquid flow induces periodic deformations on the membrane. Here, the period of membrane deformation depends on the flow rate and can again be measured electronically by the microwave sensor. Flow rate measurements based on the deformation and instability of thin membranes demonstrate the transduction potential of microwave resonators for fluid-structure interactions at micro and nanoscales.
Open Access
Towards microwave imaging of cells
(Royal Society of Chemistry, 2018) Kelleci, Mehmet; Aydoğmuş, Hande; Aslanbaş, Levent; Erbil, Selçuk Oğuz; Hanay, M. Selim
Integrated detection techniques that can characterize the morphological properties of cells are needed for the widespread use of lab-on-a-chip technology. Herein, we establish a theoretical and experimental framework to use resonant microwave sensors in their higher order modes so that the morphological properties of analytes inside a microfluidic channel can be obtained electronically. We built a phase-locked loop system that can track the first two modes of a microstrip line resonator to detect the size and location of microdroplets and cells passing through embedded microfluidic channels. The attained resolution, expressed in terms of Allan deviation at the response time, is as small as 2 × 10-8 for both modes. Additionally, simulations were performed to show that sensing with higher order modes can yield the geometrical volume, effective permittivity, two-dimensional extent, and the orientation of analytes. The framework presented here makes it possible to develop a novel type of microscope that operates at the microwave band, i.e., a radar for cells.