Protein folding rates correlate with heterogeneity of folding mechanism

Date
2004
Authors
Öztop, B.
Ejtehadi, M. R.
Plotkin, S. S.
Editor(s)
Advisor
Supervisor
Co-Advisor
Co-Supervisor
Instructor
Source Title
Physical Review Letters
Print ISSN
0031-9007
Electronic ISSN
1079-7114
Publisher
American Physical Society
Volume
93
Issue
20
Pages
208105-1 - 208105-4
Language
English
Journal Title
Journal ISSN
Volume Title
Series
Abstract

The folding rates of protein were shown to correlate with the degree of heterogeneity in the formation of native contacts. It was shown that both experimental rates and simulated free energy barriers for 2-state proteins depend on the degree of heterogeneity present in the folding process. Heterogeneity due to variance in the distribution of native loop lengths, and variance in the distribution of φ values, were observed to increase folding rates and reduce folding barriers. The observed effect due to φ variance was found to be the most statistically significant, because φ variance captures both heterogeneity arising from native topology and that arising from energetics.

Course
Other identifiers
Book Title
Citation
Published Version (Please cite this version)