dc.contributor.author | Bingöl, Zülal | |
dc.contributor.author | Alser, Mohammed | |
dc.contributor.author | Mutlu, Onur | |
dc.contributor.author | Öztürk, Özcan | |
dc.contributor.author | Alkan, Can | |
dc.date.accessioned | 2022-02-08T11:28:08Z | |
dc.date.available | 2022-02-08T11:28:08Z | |
dc.date.issued | 2021-06-24 | |
dc.identifier.isbn | 978-1-6654-1192-9 | |
dc.identifier.uri | http://hdl.handle.net/11693/77133 | |
dc.description | Conference Name: 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) | en_US |
dc.description | Date of Conference: 17-21 June 2021 | en_US |
dc.description.abstract | We introduce GateKeeper-GPU, a fast and accurate pre-alignment filter that efficiently reduces the need for expensive sequence alignment. GateKeeper-GPU improves the filtering accuracy of GateKeeper, and by exploiting the massive parallelism provided by GPU threads it concurrently examines numerous sequence pairs rapidly. GateKeeper-GPU is available at https://github.com/BilkentCompGen/GateKeeper-GPU. Please refer to the preprint at arXiv:2103.14978 for more information. | en_US |
dc.language.iso | English | en_US |
dc.source.title | IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum (IPDPSW) | en_US |
dc.relation.isversionof | https://dx.doi.org/10.1109/IPDPSW52791.2021.00039 | en_US |
dc.subject | Read mapping | en_US |
dc.subject | Pre-alignment filtering | en_US |
dc.subject | GPGPU | en_US |
dc.subject | Sequence alignment acceleration | en_US |
dc.title | GateKeeper-GPU: fast and accurate pre-alignment filtering in short read mapping | en_US |
dc.type | Conference Paper | en_US |
dc.department | Department of Computer Engineering | en_US |
dc.citation.spage | 209 | en_US |
dc.identifier.doi | 10.1109/IPDPSW52791.2021.00039 | en_US |
dc.publisher | IEEE | en_US |
dc.contributor.bilkentauthor | Bingöl, Zülal | |
dc.contributor.bilkentauthor | Öztürk, Özcan | |
dc.contributor.bilkentauthor | Alkan, Can | |
dc.identifier.eisbn | 978-1-6654-3577-2 | |
buir.contributor.orcid | Bingöl, Zülal|0000-0002-2828-9665 | en_US |
buir.contributor.orcid | Alkan, Can|0000-0002-5443-0706 | en_US |