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      PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization

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      Author(s)
      Doğrusöz, Uğur
      Erson, E. Zeynep
      Giral, Erhan
      Demir, Emek
      Babur, Özgün
      Çetintaş, Ahmet
      Çolak, Recep
      Date
      2006-02-01
      Source Title
      Bioinformatics
      Print ISSN
      1367-4803
      Publisher
      Oxford University Press
      Volume
      22
      Issue
      3
      Pages
      374 - 375
      Language
      English
      Type
      Article
      Item Usage Stats
      279
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      181
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      Abstract
      Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats. © The Author 2005. Published by Oxford University Press. All rights reserved.
      Keywords
      Access to information
      Computer interface
      Computer system
      Information retrieval
      Internet
      Priority journal
      Protein protein interaction
      Proteomics
      Systems biology
      Computer graphics
      Computer simulation
      Database management systems
      Databases
      Gene expression regulation
      Information storage and retrieval
      Models
      Online systems
      Protein interaction mapping
      Proteome
      Signal transduction
      Software
      User-computer interface
      Permalink
      http://hdl.handle.net/11693/23865
      Published Version (Please cite this version)
      http://dx.doi.org/10.1093/bioinformatics/bti776
      Collections
      • Bilkent Center for Bioinformatics (BCBI) 19
      • Department of Computer Engineering 1510
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