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      • Department of Computer Engineering
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      Software support for SBGN maps: SBGN-ML and LibSBGN

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      Author
      Iersel, Martijn P. van
      Villéger, A. C.
      Czauderna, T.
      Boyd, S. E.
      Bergmann, F. T.
      Luna, A.
      Demir, E.
      Sorokin, A.
      Dogrusoz, U.
      Matsuoka, Y.
      Funahashi, A.
      Aladjem, M. I.
      Mi, H.
      Moodie, S. L.
      Kitano, H.
      Le novère, N.
      Schreiber, F.
      Date
      2012
      Source Title
      Bioinformatics
      Print ISSN
      1367-4803
      Publisher
      Oxford University Press
      Volume
      28
      Issue
      15
      Pages
      2016 - 2021
      Language
      English
      Type
      Article
      Item Usage Stats
      136
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      150
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      Abstract
      Motivation: LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The library also supports validation of maps, which simplifies the task of ensuring compliance with the detailed SBGN specifications. With this effort we hope to increase the adoption of SBGN in bioinformatics tools, ultimately enabling more researchers to visualize biological knowledge in a precise and unambiguous manner. © The Author(s) 2012. Published by Oxford University Press.
      Keywords
      Biology
      Computer language
      Computer program
      Methodology
      Systems biology
      Computational biology
      Programming languages
      Software
      Permalink
      http://hdl.handle.net/11693/21386
      Published Version (Please cite this version)
      http://dx.doi.org/10.1093/bioinformatics/bts270
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      • Department of Computer Engineering 1368
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