Now showing items 1-6 of 6
ChiBE: interactive visualization and manipulation of BioPAX pathway models
(Oxford University Press, 2010-02-01)
SUMMARY: Representing models of cellular processes or pathways in a graphically rich form facilitates interpretation of biological observations and generation of new hypotheses. Solving biological problems using large ...
Algorithms for effective querying of compound graph-based pathway databases
(BioMed Central Ltd., 2009-11-16)
Background: Graph-based pathway ontologies and databases are widely used to represent data about cellular processes. This representation makes it possible to programmatically integrate cellular networks and to investigate ...
PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization
(Oxford University Press, 2006-02-01)
Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly ...
An ontology for collaborative construction and analysis of cellular pathways
(Oxford University Press, 2004-02-12)
Motivation: As the scientific curiosity in genome studies shifts toward identification of functions of the genomes in large scale, data produced about cellular processes at molecular level has been accumulating with an ...
The BioPAX community standard for pathway data sharing
(Nature Publishing Group, 2010-09)
Biological Pathway Exchange (BioPAX) is a standard language to represent biological pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The rapid growth of the volume of pathway ...
The systems biology graphical notation
(Nature Publishing Group, 2009-08)
Circuit diagrams and Unified Modeling Language diagrams are just two examples of standard visual languages that help accelerate work by promoting regularity, removing ambiguity and enabling software tool support for ...