Recent Submissions

  • Presenting strategies on ROPES+model for CBI lesson design 

    İpek, İsmail (Abant İzzet Baysal Üniversitesi Eğitim Fakültesi, 2009)
    Computer-based instruction (CBI) has strong historical roots in behavioral psychology. Recent advances in CBI have changed instructional environment for CBI design. In addition, CBI designs have been influenced by technological ...
  • Yazılım mimarisi bakış açılarındaki tutarlılık kontrolü için sistematik bir yöntem 

    Ekşi, Gülsüm Ece; Tekinerdoğan, B. (Dokuz Eylül Üniversitesi Mühendislik Fakültesi, 2017)
    Literatürde, tasarım amaçlarına ulaşmayı sağlayan ve kodla yazılım mimarisi arasındaki uyumsuzlukları bulmaya yarayan bir takım çalışmalar öne sürülmüştür. Mimari bakış açıları ve kod arasındaki uyum nasıl olmalıysa, aynı ...
  • Türkçe metinler üzerine yapılan sayısal üslup araştırmalarını inceleyen ve Benim Adım Kırmızı çevirilerinin aslına alan sadakatini ölçen bir çalışma 

    Çalışkan, Sevil; Can, Fazlı (Türk Kütüphaneciler Derneği, 2018)
    Bu makalede bilişimin beşerî bilimlerdeki önemli bir uygulaması olan sayısal üslup analizi yönteminin tanıtılması hedeflenmiş ve çevirilerin aslına sadakatini ölçen özgün bir araştırma sunulmuştur. Sayısal üslup analizi, ...
  • Modeling software product line engineering with essence frame 

    Tüzün, Eray; Giray, G.; Tekinerdoğan, B.; Macit, Y. (Gazi Üniversitesi Bilişim Enstitüsü, 2018)
    Although several software product line engineering (SPLE) methods have been described in the literature, adopting these methods in practice is often not straightforward. Thorough understanding of the methods and their ...
  • Generation of Turkish verbal groups with systemic-functional grammar 

    Korkmaz, Turgay; Çiçekli, İlyas (TÜBİTAK, 1996)
    This paper mainly presents the verbal group part of a Turkish sentence generator that is currently under development for producing the actual text from its semantic description. To concentrate on the text generation rather ...
  • Automatic characterization of copy number polymorphism using high throughput sequencing 

    Alkan, Can (TÜBİTAK, 2020)
    Genome structural variation, broadly defined as alterations longer than 50 bp, are important sources for genetic variation among humans, including those that cause complex diseases such as autism, developmental delay, and ...
  • ARG: A tool for automatic report generation 

    Karakaya, K. Murat; Güvenir, H. Altay (Aves Yayıncılık, 2004)
    The expansion of on-line text with the rapid growth of the Internet imposes utilizing Data Mining techniques to reveal the information embedded in these documents. Therefore text classification and text summarization are ...
  • A Systematic mapping study on the current status of total cost of ownership for information systems 

    Giray, G.; Tüzün, Eray (Gazi Üniversitesi Bilişim Enstitüsü, 2018)
    More and more organizations are being run dependent on information systems. This makes information systems a pivotal component of our lives. Because of globalization and harsh competition, strategic cost management has ...
  • A general purpose simulator for unstructured P2P networks and a sample application 

    Karakaya, Kasım Murat; Ulusoy, Özgür; Körpeoğlu, İbrahim (Milli Savunma Üniversitesi Alparslan Savunma Bilimleri Enstitüsü, 2009)
    Peer-to-peer (P2P) networks are recently becoming very popular and successful alternative for resource sharing and content distribution. Thus, there have been many proposals to improve their performance. However, since a ...
  • Microarray data analysis and pathway activity inference in PATIKA 

    Babur, Özgün; Demir, Emek; Ayaz, Aslı; Doğrusöz, Uğur; Sakarya, Onur (ISCB Org, 2004)
    Pathway activity inference attempts to infer differential activity of cellular networks, given a qualitative state - transition model of the network and an expression profile of RNA molecules. We present an efficient ...
  • Pathway activity inference using microarray data 

    Babur, Özgün; Demir, Emek; Ayaz, Aslı; Doğrusöz, Uğur; Sakarya, Onur (Bilkent Center for Bioinformatics (BCBI), 2004)
    Motivation: Microarray technology provides cell-scale expression data; however, analyzing this data is notoriously difficult. It is becoming clear that system-oriented methods are needed in order to best interpret this ...
  • PATIKAweb: a Web service for querying, visualizing and analyzing a graph-based pathway database 

    Aksay, Çağrı; Arık, Fatma; Ataer, Esra; Ayaz, Aslı; Babur, Özgün; Belviranlı, Mehmet E.; Çetintaş, Ahmet; Çolak, Recep; Çözen, G.; Demir, Emek; Dilek, Alptuğ; Doğrusöz, Uğur; Giral, Erhan; Kaya, Engin; Küçük, Evren; Tekin, A. S.; Yıldırım, Hilmi; Erson, Zeynep (ISCB Org, 2005-06)
    PATIKAweb provides a Web service for retrieving and analyzing biological pathways in PATIKA database, which currently contains data integrated from popular public pathway databases like Reactome. It features a user-friendly ...
  • PATIKA: An informatics infrastructure for cellular networks 

    Aksay, Çağrı; Ayaz, Aslı; Babur, Özgün; Bilgin, C.; Çetintaş, Ahmet; Çivril, Ali; Çolak, Recep; Çözen, G.; Demir, Emek; Doğrusöz, Uğur; Erson, Zeynep; Gerdaneri, Ozan; Giral, Erhan; Güleşır, Gürcan; Nişancı, Gürkan; Sakarya, O.; Yıldırım, Hilmi (ISCB Org, 2004)
    The PATIKA Project aims for an informatics infrastructure to cope with the inherently complex cellular pathway data and provides software tools with sophisticated visualization technology around a central database using ...
  • PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways 

    Demir, Emek; Babur, Özgün; Doğrusöz, Uğur; Gürsoy, Atilla; Nişancı, Gürkan; Çetin Atalay, Rengül; Öztürk, Mehmet (American Society for Biochemistry and Molecular Biology(ASBMB), 2002-09)
  • Towards interactive data exploration 

    Binnig, C.; Basık, Fuat; Buratti, B.; Çetintemel, U.; Chung, Y.; Crotty, A.; Cousins, C.; Ebert, D.; Eichmann, P.; Galakatos, A.; Hattasch, B.; Ilkhechi, A.; Kraska, T.; Shang, Z.; Tromba, I.; Usta, Arif; Utama, P.; Upfal, E.; Wang, L.; Weir, N.; Zeleznik, R.; Zgraggen, E. (Springer, 2019)
    Enabling interactive visualization over new datasets at “human speed” is key to democratizing data science and maximizing human productivity. In this work, we first argue why existing analytics infrastructures do not support ...
  • Metabolomic profile of aggressive meningiomas by using high-resolution magic angle spinning nuclear magnetic resonance 

    Bender, L.; Somme, F.; Ruhland, E.; Çiçek, A. Ercüment; Bund, C.; Namer, J. (American Chemical Society, 2019)
    Meningiomas are in most cases benign brain tumors. The WHO 2016 classification defines three grades of meningiomas. This classification had a prognosis value because grade III meningiomas have a worse prognosis value ...
  • Discovery of tandem and interspersed segmental duplications using high-throughput sequencing 

    Söylev, Arda; Le, T. M.; Amini, H.; Alkan, Can; Hormozdiari, F. (Oxford University Press, 2019-04)
    Motivation: Several algorithms have been developed that use high-throughput sequencing technology to characterize structural variations (SVs). Most of the existing approaches focus on detecting relatively simple types of ...
  • Shouji: a fast and efficient pre-alignment filter for sequence alignment 

    Alser, Mohammed; Hassan, H.; Kumar, A.; Mutlu, Onur; Alkan, Can (Oxford University Press, 2019-11-01)
    The ability to generate massive amounts of sequencing data continues to overwhelm the processing capability of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design ...
  • ST-Steiner: a spatio-temporal gene discovery algorithm 

    Norman, Utku; Çiçek, A. Ercüment (Oxford University Press, 2019-09-15)
    Motivation: Whole exome sequencing (WES) studies for autism spectrum disorder (ASD) could identify only around six dozen risk genes to date because the genetic architecture of the disorder is highly complex. To speed the ...
  • Understanding the knowledge gaps of software engineers: an empirical analysis based on SWEBOK 

    Garousi, V.; Giray, G.; Tüzün, Eray (Association for Computing Machinery, 2019)
    Context: Knowledge level and productivity of the software engineering (SE) workforce are the subject of regular discussions among practitioners, educators, and researchers. There have been many efforts to measure and improve ...

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