Browsing by Keywords "Sequence alignment acceleration"

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    • GateKeeper-GPU: fast and accurate pre-alignment filtering in short read mapping 

      Bingöl, Zülal; Alser, Mohammed; Mutlu, Onur; Öztürk, Özcan; Alkan, Can (IEEE, 2021-06-24)
      We introduce GateKeeper-GPU, a fast and accurate pre-alignment filter that efficiently reduces the need for expensive sequence alignment. GateKeeper-GPU improves the filtering accuracy of GateKeeper, and by exploiting the ...