Now showing items 1-2 of 2

    • Accelerating read mapping with FastHASH 

      Xin, H.; Lee, D.; Hormozdiari, F.; Yedkar, S.; Mutlu, O.; Alkan C. (BioMed Central Ltd., 2013)
      With the introduction of next-generation sequencing (NGS) technologies, we are facing an exponential increase in the amount of genomic sequence data. The success of all medical and genetic applications of next-generation ...
    • De novo ChIP-seq analysis 

      He, X.; Cicek, A. E.; Wang, Y.; Schulz, M. H.; Le, Hai-Son; Bar-Joseph, Z. (BioMed Central Ltd., 2015)
      Methods for the analysis of chromatin immunoprecipitation sequencing (ChIP-seq) data start by aligning the short reads to a reference genome. While often successful, they are not appropriate for cases where a reference ...