Browsing by Author "Bingöl, Zülal"
Now showing items 1-5 of 5
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GateKeeper-GPU: accelerated pre-alignment filtering in short read mapping
(Bilkent University, 2020-08)Recent advances in high throughput sequencing (HTS) facilitate fast production of short DNA fragments (reads) in numerous amounts. Although the production is becoming inexpensive everyday, processing the present data for ... -
GateKeeper-GPU: fast and accurate pre-alignment filtering in short read mapping
(IEEE, 2021-06-24)We introduce GateKeeper-GPU, a fast and accurate pre-alignment filter that efficiently reduces the need for expensive sequence alignment. GateKeeper-GPU improves the filtering accuracy of GateKeeper, and by exploiting the ... -
GenASM: a high-performance, low-power approximate string matching acceleration framework for genome sequence analysis
(IEEE Computer Society, 2020)Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. To perform genome sequencing, devices extract ... -
SeGraM: A universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping
(Association for Computing Machinery, 2020-06-11)A critical step of genome sequence analysis is the mapping of sequenced DNA fragments (i.e., reads) collected from an individual to a known linear reference genome sequence (i.e., sequence-to-sequence mapping). Recent works ... -
Toplum Gönüllüleri Vakfı' nın kuruluş süreci ve Türkiye' deki sivil toplum anlayışına etkisi
(Bilkent University, 2015)
