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A compound graph layout algorithm for biological pathways
(Springer, Berlin, Heidelberg, 2004-09-10)
We present a new compound graph layout algorithm based on traditional force-directed layout scheme with extensions for nesting and other application-specific constraints. The algorithm has been successfully implemented ...
A constrained, force-directed layout algorithm for biological pathways
(Springer, Berlin, Heidelberg, 2004-09)
We present a new elegant algorithm for layout of biological signaling pathways. It uses a force-directed layout scheme, taking into account directional and regional constraints enforced by different molecular interaction ...
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways
(American Society for Biochemistry and Molecular Biology(ASBMB), 2002-09)