Now showing items 1-5 of 5
Algorithms for effective querying of compound graph-based pathway databases
(BioMed Central Ltd., 2009-11-16)
Background: Graph-based pathway ontologies and databases are widely used to represent data about cellular processes. This representation makes it possible to programmatically integrate cellular networks and to investigate ...
VISIBIOweb: visualization and layout services for BioPAX pathway models
(Oxford University Press, 2010-06-01)
With recent advancements in techniques for cellular data acquisition, information on cellular processes has been increasing at a dramatic rate. Visualization is critical to analyzing and interpreting complex information; ...
A layout algorithm for undirected compound graphs
We present an algorithm for the layout of undirected compound graphs, relaxing restrictions of previously known algorithms in regards to topology and geometry. The algorithm is based on the traditional force-directed layout ...
PATIKAmad: putting microarray data into pathway context
(Wiley - V C H Verlag GmbH & Co. KGaA, 2008-06)
High-throughput experiments, most significantly DNA microarrays, provide us with system-scale profiles. Connecting these data with existing biological networks poses a formidable challenge to uncover facts about a cell's ...
A layout algorithm for signaling pathways
Visualization is crucial to the effective analysis of biological pathways. A poorly laid out pathway confuses the user, while a well laid out one improves the user's comprehension of the underlying biological phenomenon. ...