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dc.contributor.authorDilek, Alptuğen_US
dc.contributor.authorBelviranlı, Mehmet E.en_US
dc.contributor.authorDoğrusöz, Uğuren_US
dc.date.accessioned2016-02-08T09:58:38Z
dc.date.available2016-02-08T09:58:38Z
dc.date.issued2010-06-01en_US
dc.identifier.issn0305-1048
dc.identifier.urihttp://hdl.handle.net/11693/22323
dc.description.abstractWith recent advancements in techniques for cellular data acquisition, information on cellular processes has been increasing at a dramatic rate. Visualization is critical to analyzing and interpreting complex information; representing cellular processes or pathways is no exception. VISIBIOweb is a free, open-source, web-based pathway visualization and layout service for pathway models in BioPAX format. With VISIBIOweb, one can obtain well-laid-out views of pathway models using the standard notation of the Systems Biology Graphical Notation (SBGN), and can embed such views within onés web pages as desired. Pathway views may be navigated using zoom and scroll tools; pathway object properties, including any external database references available in the data, may be inspected interactively. The automatic layout component of VISIBIOweb may also be accessed programmatically from other tools using Hypertext Transfer Protocol (HTTP). The web site is free and open to all users and there is no login requirement. It is available at: http://visibioweb.patika.org. © The Author(s) 2010. Published by Oxford University Press.en_US
dc.language.isoEnglishen_US
dc.source.titleNucleic Acids Researchen_US
dc.relation.isversionofhttp://dx.doi.org/10.1093/nar/gkq352en_US
dc.subjectBioinformaticsen_US
dc.subjectComputer aided designen_US
dc.subjectComputer graphicsen_US
dc.subjectComputer interfaceen_US
dc.subjectData analysis softwareen_US
dc.subjectDisplay systemen_US
dc.subjectElectronic data interchangeen_US
dc.subjectInterneten_US
dc.subjectOnline analysisen_US
dc.subjectPriority journalen_US
dc.subjectWeb browseren_US
dc.subjectBiological modelen_US
dc.subjectSoftwareen_US
dc.subjectUser-computer interfaceen_US
dc.subjectModelsen_US
dc.subjectSoftwareen_US
dc.titleVISIBIOweb: visualization and layout services for BioPAX pathway modelsen_US
dc.typeArticleen_US
dc.departmentDepartment of Computer Engineeringen_US
dc.departmentBilkent Center for Bioinformatics (BCBI)
dc.citation.spageW150en_US
dc.citation.epageW154en_US
dc.citation.volumeNumber38en_US
dc.citation.issueNumberSUPPL-2en_US
dc.identifier.doi10.1093/nar/gkq352en_US
dc.publisherOxford University Pressen_US
dc.contributor.bilkentauthorDilek, Alptuğ
dc.contributor.bilkentauthorBelviranli, Mehmet E.
dc.contributor.bilkentauthorDoğrusöz, Uğur
dc.identifier.eissn1362-4962


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