VISIBIOweb: Visualization and layout services for BioPAX pathway models
Nucleic Acids Research
W150 - W154
MetadataShow full item record
Please cite this item using this persistent URLhttp://hdl.handle.net/11693/22323
With recent advancements in techniques for cellular data acquisition, information on cellular processes has been increasing at a dramatic rate. Visualization is critical to analyzing and interpreting complex information; representing cellular processes or pathways is no exception. VISIBIOweb is a free, open-source, web-based pathway visualization and layout service for pathway models in BioPAX format. With VISIBIOweb, one can obtain well-laid-out views of pathway models using the standard notation of the Systems Biology Graphical Notation (SBGN), and can embed such views within onés web pages as desired. Pathway views may be navigated using zoom and scroll tools; pathway object properties, including any external database references available in the data, may be inspected interactively. The automatic layout component of VISIBIOweb may also be accessed programmatically from other tools using Hypertext Transfer Protocol (HTTP). The web site is free and open to all users and there is no login requirement. It is available at: http://visibioweb.patika.org. © The Author(s) 2010. Published by Oxford University Press.
- Work in Progress 1202
Showing items related by title, author, creator and subject.
Gerek Ö.N.; Çetin, A.E. (2006)Lifting-style implementations of wavelets are widely used in image coders. A two-dimensional (2-D) edge adaptive lifting structure, which is similar to Daubechies 5/3 wavelet, is presented. The 2-D prediction filter predicts ...
Arkin, E.; Tekinerdogan, B. (CEUR-WS, 2013)One of the important problems in parallel computing is the mapping of the parallel algorithm to the parallel computing platform. Hereby, for each parallel node the corresponding code for the parallel nodes must be implemented. ...
Şaykol, E.; Sinop, A.K.; Güdükbay, U.; Ulusoy Ö.; Çetin, A.E. (2004)There is an accelerating demand to access the visual content of documents stored in historical and cultural archives. Availability of electronic imaging tools and effective image processing techniques makes it feasible to ...