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      VISIBIOweb: visualization and layout services for BioPAX pathway models

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      Author(s)
      Dilek, Alptuğ
      Belviranlı, Mehmet E.
      Doğrusöz, Uğur
      Date
      2010-06-01
      Source Title
      Nucleic Acids Research
      Print ISSN
      0305-1048
      Electronic ISSN
      1362-4962
      Publisher
      Oxford University Press
      Volume
      38
      Issue
      SUPPL-2
      Pages
      W150 - W154
      Language
      English
      Type
      Article
      Item Usage Stats
      253
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      206
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      Abstract
      With recent advancements in techniques for cellular data acquisition, information on cellular processes has been increasing at a dramatic rate. Visualization is critical to analyzing and interpreting complex information; representing cellular processes or pathways is no exception. VISIBIOweb is a free, open-source, web-based pathway visualization and layout service for pathway models in BioPAX format. With VISIBIOweb, one can obtain well-laid-out views of pathway models using the standard notation of the Systems Biology Graphical Notation (SBGN), and can embed such views within onés web pages as desired. Pathway views may be navigated using zoom and scroll tools; pathway object properties, including any external database references available in the data, may be inspected interactively. The automatic layout component of VISIBIOweb may also be accessed programmatically from other tools using Hypertext Transfer Protocol (HTTP). The web site is free and open to all users and there is no login requirement. It is available at: http://visibioweb.patika.org. © The Author(s) 2010. Published by Oxford University Press.
      Keywords
      Bioinformatics
      Computer aided design
      Computer graphics
      Computer interface
      Data analysis software
      Display system
      Electronic data interchange
      Internet
      Online analysis
      Priority journal
      Web browser
      Biological model
      Software
      User-computer interface
      Models
      Software
      Permalink
      http://hdl.handle.net/11693/22323
      Published Version (Please cite this version)
      http://dx.doi.org/10.1093/nar/gkq352
      Collections
      • Bilkent Center for Bioinformatics (BCBI) 19
      • Department of Computer Engineering 1510
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