Department of Computer Engineering: Recent submissions
Now showing items 1-20 of 1561
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Software architecture
(CRC Press, 2022-05-30)In this chapter, we have defined an overview of software architecture design. We have focused on three basic topics including software architecture modeling, software architecture design methods, and software architecture ... -
CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data
(Public Library of Science, 2022-12-14)To date, ancient genome analyses have been largely confined to the study of single nucleotide polymorphisms (SNPs). Copy number variants (CNVs) are a major contributor of disease and of evolutionary adaptation, but identifying ... -
SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more
(Public Library of Science, 2022-11-14)Visualization is a key recurring requirement for effective analysis of relational data. Biology is no exception. It is imperative to annotate and render biological models in standard, widely accepted formats. Finding ... -
Fast characterization of segmental duplication structure in multiple genome assemblies
(BioMed Central Ltd, 2022-12)Motivation: The increasing availability of high-quality genome assemblies raised interest in the characterization of genomic architecture. Major architectural elements, such as common repeats and segmental duplications ... -
DeepND: Deep multitask learning of gene risk for comorbid neurodevelopmental disorders
(Cell Press, 2022-07-08)Autism spectrum disorder and intellectual disability are comorbid neurodevelopmental disorders with complex genetic architectures. Despite large-scale sequencing studies, only a fraction of the risk genes was identified ... -
Learning robotic manipulation of natural materials with variable properties for construction tasks
(Institute of Electrical and Electronics Engineers, 2022-03-15)The introduction of robotics and machine learning to architectural construction is leading to more efficient construction practices. So far, robotic construction has largely been implemented on standardized materials, ... -
Hybrid image-/data-parallel rendering using island parallelism
(Institute of Electrical and Electronics Engineers, 2022-12-06)In parallel ray tracing, techniques fall into one of two camps: image-parallel techniques aim at increasing frame rate by replicating scene data across nodes and splitting the rendering work across different ranks, and ... -
edaGAN: Encoder-Decoder Attention Generative Adversarial Networks for multi-contrast MR image synthesis
(Institute of Electrical and Electronics Engineers, 2022-05-16)Magnetic resonance imaging (MRI) is the preferred modality among radiologists in the clinic due to its superior depiction of tissue contrast. Its ability to capture different contrasts within an exam session allows it to ... -
An analysis of relations among European countries based on UEFA European football championship
(Sciendo, 2022)With the increasing globalization in the 21st century, football has become more of an industry than a sport that supports tremendous amount of money circulation. More players started to play in countries different from ... -
Implications of the first complete human genome assembly
(Cold Spring Harbor Laboratory Press, 2022-03-31) -
Polishing copy number variant calls on exome sequencing data via deep learning
(NLM (Medline), 2022-06-13)Accurate and efficient detection of copy number variants (CNVs) is of critical importance owing to their significant association with complex genetic diseases. Although algorithms that use whole-genome sequencing (WGS) ... -
Long-horizon multi-robot rearrangement planning for construction assembly
(Institute of Electrical and Electronics Engineers, 2022-08-26)Robotic construction assembly planning aims to find feasible assembly sequences as well as the corresponding robot-paths and can be seen as a special case of task and motion planning (TAMP). As construction assembly can ... -
A unifying network modeling approach for codon optimization
(Oxford University Press, 2022-06-28)Motivation: Synthesizing genes to be expressed in other organisms is an essential tool in biotechnology. While the many-to-one mapping from codons to amino acids makes the genetic code degenerate, codon usage in a ... -
SeGraM: A universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping
(Association for Computing Machinery, 2020-06-11)A critical step of genome sequence analysis is the mapping of sequenced DNA fragments (i.e., reads) collected from an individual to a known linear reference genome sequence (i.e., sequence-to-sequence mapping). Recent works ... -
Targeted metabolomics analyses for brain tumor margin assessment during surgery
(Oxford University Press, 2022-06-15)Motivation: Identification and removal of micro-scale residual tumor tissue during brain tumor surgery are key for survival in glioma patients. For this goal, High-Resolution Magic Angle Spinning Nuclear Magnetic ... -
Uncovering complementary sets of variants for predicting quantitative phenotypes
(Oxford University Press, 2021-12-02)Motivation: Genome-wide association studies show that variants in individual genomic loci alone are not sufficient to explain the heritability of complex, quantitative phenotypes. Many computational methods have been ... -
UnSplit: Data-Oblivious model inversion, model stealing, and label inference attacks against split learning
(Association for Computing Machinery, 2022-11-07)Training deep neural networks often forces users to work in a distributed or outsourced setting, accompanied with privacy concerns. Split learning aims to address this concern by distributing the model among a client and ... -
SplitGuard: Detecting and mitigating training-hijacking attacks in split learning
(Association for Computing MachineryNew YorkNYUnited States, 2022-11-07)Distributed deep learning frameworks such as split learning provide great benefits with regards to the computational cost of training deep neural networks and the privacy-aware utilization of the collective data of a group ... -
Proposing new routing protocol based on chaos algorithm
(Conscientia Beam, 2022-05-09)In MANET, the multicast routing is considered a non-deterministic polynomial (NP) complexity, it contains assorted objectives and restrictions. In the multicast issue of MANET, the quality of services (QoS) based upon cost, ... -
Binary transformation method for multi-label stream classification
(Association for Computing Machinery, 2022-10-17)Data streams produce extensive data with high throughput from various domains and require copious amounts of computational resources and energy. Many data streams are generated as multi-labeled and classifying this data ...