Now showing items 1-8 of 8

    • Algorithms for effective querying of compound graph-based pathway databases 

      Dogrusoz, U.; Cetintas, A.; Demir, E.; Babur, O. (BioMed Central Ltd., 2009)
      Background: Graph-based pathway ontologies and databases are widely used to represent data about cellular processes. This representation makes it possible to programmatically integrate cellular networks and to investigate ...
    • BRAPH: A graph theory software for the analysis of brain connectivity 

      Mijalkov, M.; Kakaei, E.; Pereira, J. B.; Westman, E.; Volpe, G. (Public Library of Science, 2017)
      The brain is a large-scale complex network whose workings rely on the interaction between its various regions. In the past few years, the organization of the human brain network has been studied extensively using concepts ...
    • ChiBE: interactive visualization and manipulation of BioPAX pathway models 

      Babur, O.; Dogrusoz, U.; Demir, E.; Sander, C. (Oxford University Press, 2010)
      SUMMARY: Representing models of cellular processes or pathways in a graphically rich form facilitates interpretation of biological observations and generation of new hypotheses. Solving biological problems using large ...
    • MaterialVis: material visualization tool using direct volume and surface rendering techniques 

      Okuyan, E.; Güdükbay U.; Bulutay, C.; Heinig, Karl-Heinz (Elsevier Inc., 2014)
      Visualization of the materials is an indispensable part of their structural analysis. We developed a visualization tool for amorphous as well as crystalline structures, called MaterialVis. Unlike the existing tools, ...
    • MESAdb: microRNA expression and sequence analysis database 

      Kaya, K. D.; Karakülah, G.; Yakıcıer, C. M.; Acar, A. C.; Konu, Ö. (Oxford University Press, 2011)
      MicroRNA expression and sequence analysis database (http://konulab.fen. bilkent.edu.tr/mirna/) (mESAdb) is a regularly updated database for the multivariate analysis of sequences and expression of microRNAs from multiple ...
    • PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization 

      Dogrusoz, U.; Erson, E. Z.; Giral, E.; Demir, E.; Babur, O.; Cetintas, A.; Colak, R. (Oxford University Press, 2006-02-01)
      Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly ...
    • A prescription fraud detection model 

      Aral, K. D.; Güvenir H. A.; Sabuncuoğlu, T.; Akar, A. R. (Elsevier Ireland Ltd., 2012)
      Prescription fraud is a main problem that causes substantial monetary loss in health care systems. We aimed to develop a model for detecting cases of prescription fraud and test it on real world data from a large multi-center ...
    • VISIBIOweb: visualization and layout services for BioPAX pathway models 

      Dilek, A.; Belviranli, M. E.; Dogrusoz, U. (Oxford University Press, 2010-05)
      With recent advancements in techniques for cellular data acquisition, information on cellular processes has been increasing at a dramatic rate. Visualization is critical to analyzing and interpreting complex information; ...